DY258611
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS1_PYRAE (Replication factor C small subunit 1 OS=Pyrobaculum aerophilum GN=rfcS1 PE=3 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 4.818e-45 Identity = 96/259 (37.07%), Postives = 159/259 (61.39%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 L +AR+LYG + LELN+SD+RGI+V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERLK + + EG+++ E + + L GDMRKA+N+LQ ++ + AV P DI ++ ++ F + +++ E+ KG+A D +R + ++ + D++ + LAD++YRL+ G ++++QL +++ Sbjct: 55 LVLARELYGEYWRENTLELNASDERGINVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRPADIIELFNLAISGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRMPIDDDIKAEIAELLADVDYRLTQGADEEIQLTYLLT 310
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_SULAC (Replication factor C small subunit OS=Sulfolobus acidocaldarius GN=rfcS PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.402e-44 Identity = 100/261 (38.31%), Postives = 161/261 (61.69%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV--TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+ R LYG Y LELN+SD+RGIDV+R ++++FA T + + K++LLDEAD MT DAQ ALRR +E YT+ TRF L CN ++KII +QSR FRF PL+ V RL + + E ++ G+ + + GDMRKA+N++Q+ A +IT E VY G PK+I ++ + L+ F + ++ E+ + GL+ DI+++V + +I +P D++V L++ ++E+R+ G +D++QL + ++ Sbjct: 56 LALVRDLYGNNYRQYFLELNASDERGIDVIRNKVKEFARTVASN---NVPFKVILLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAA-SAYGKITVETVYKVLGLAQPKEIREMLHLALSGKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDEIQLSAFLA 312
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METB6 (Replication factor C small subunit OS=Methanoregula boonei (strain 6A8) GN=rfcS PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 3.123e-44 Identity = 100/264 (37.88%), Postives = 154/264 (58.33%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQA 800 + +AR+ +G + ELN+SD+RGIDVVR QI++FA T+ A+ K++ LDEADA+T DAQ ALRR +E Y K RF L CN +KII +QSRC +RF PL P V E + + E LDVT + A+V + GDMRKA+N LQ + S I VY T N P++I ++ L+ F + ++ + +G+A +++ + + K M ++V L++ L + ++RLS G + +Q+E++I+ F A Sbjct: 57 VTLAREFFGDSWQMNFRELNASDERGIDVVRNQIKEFARTRPAG---DAAFKILFLDEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKEEITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARPEEIGELLTLSLSGDFDGAEALLTRLLRERGIAPNELINQCYRALTKRDMDRVLKVELIDALGETDFRLSEGASSDIQMEALIARFVLA 317
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_NANEQ (Replication factor C small subunit OS=Nanoarchaeum equitans GN=rfcS PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 4.079e-44 Identity = 92/261 (35.25%), Postives = 165/261 (63.22%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEG--LDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+A +LYG + LELN+SD+RGIDV+R ++++FA + K+V LDEADA+T+DAQ ALRR++EKY+++TRF L CN +KII +QSR T F+F PLE E + +++ EG L+ + + AL + GD+RKA+NILQ+ M S+ IT + +Y PK+I+++ + +F ++ + ++ ++ G++ D+++ + V+ + + ++ +++ + DIE+R+ G +D +QL+++++ Sbjct: 53 LALAHELYGDAWRENFLELNASDERGIDVIRHKVKEFARAKPIG---DVPFKIVFLDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASIAKPKEIDEVLNKAMQGNFLEARSMLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIEFRIVEGADDLVQLDALLA 310
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_PYRCJ (Replication factor C small subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 5.327e-44 Identity = 93/254 (36.61%), Postives = 156/254 (61.42%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQL 770 L +AR+LYG + LELN+SD+RGI V+R+++++FA T KA KLV+LDEAD MT DAQ ALRR++E Y +NTRF L+ N V++II + SRC FRF+P+ + ERL+ + +EG+++ + + + + GDMRKA+N+LQ S+ + AV P D+ ++ + A + ++ E+ KG+A VD++R + ++++ DV+ + L++++YRL+ G ++++QL Sbjct: 55 LVLARELYGEYWRENTLELNASDERGIGVIRERVKEFARTAPVG---KAPFKLVILDEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLAMGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLDDDVKAEVAELLSEVDYRLTQGADEEIQL 305
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_THEPD (Replication factor C small subunit OS=Thermofilum pendens (strain Hrk 5) GN=rfcS PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 9.087e-44 Identity = 100/262 (38.17%), Postives = 154/262 (58.78%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVF---KIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIIS 785 LA+A LYG + + LELN+SD+RGIDV+R +I+D+A T KLV+LDEAD MT DAQ ALRR +E +++NTRF LI N +KII +QSRC FRF PL +RL+ + + EG+ V +G L A+ GD+RKA+N LQ+ S+ +TEE VY G PK++ ++ L + ++ ++ + GL+ VDI+R + V +++ L+ + + YR+ G +D++QL +++S Sbjct: 55 LALAHDLYGESWRDNTLELNASDERGIDVIRSRIKDYARTLPIG---DVPFKLVILDEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKPKEVREMIESALKGNLLEARDKLRLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIVEGSDDEIQLMALLS 313
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METTH (Replication factor C small subunit OS=Methanobacterium thermoautotrophicum GN=rfcS PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 2.024e-43 Identity = 95/267 (35.58%), Postives = 159/267 (59.55%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDV----RVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQ 797 LA+AR++ G + LELN+SD RGID VR I++F + V A +++ LDE D MTKDAQ ALRR +E YTK + F L CN +KII +QSRC FRF PL+ + +RL+++ E E L+ L +V GD+RKA+N+LQS ++ITE ++Y PKD+ ++ +L+ F ++ + E+ + +G++ D+V ++ + ++ M +V V L++ + + ++R+ G N ++QLE++++ F + Sbjct: 57 LALAREILGEYWRQNFLELNASDARGIDTVRTSIKNFCRLKP----VGAPFRIIFLDEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARPKDVRKMIKTILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAIGEYDFRIREGANPRIQLEALLARFLE 319
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METHJ (Replication factor C small subunit OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 2.644e-43 Identity = 96/261 (36.78%), Postives = 154/261 (59.00%), Query Frame = 3 Query: 9 LAVARKLYGAQYHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTF 791 +A+AR+ +G + ELN+SD+RGIDVVR QI+ FA T F ++ K++ LDEADA+T DAQ ALRR +E Y + RF L CN KII +QSRC +RF PL V+E +K + + L VTE + A+ + GDMRKA+N LQ + + I+ + ++ T P++I+ + L +F + + + +G+A +++ ++ V K +P V+VRL++ L + ++RLS G +Q++S+I+ F Sbjct: 57 VALAREFFGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFG---GSTFKILFLDEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSEMVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARPEEIDDLIDLSLAGNFLGAGSSLQALLHDRGIAPQELISQLYRAVVKRDLPEAVKVRLIDSLGETDFRLSEGAGSDIQMQSLIAKF 314
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METAC (Replication factor C small subunit OS=Methanosarcina acetivorans GN=rfcS PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.714e-42 Identity = 97/276 (35.14%), Postives = 164/276 (59.42%), Query Frame = 3 Query: 9 LAVARKLYGAQ-YHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQAR 803 +++AR+++G + ELN+SD+RGID+VR +I++FA T A K++ LDEADA+T DAQ ALRR +E+++ N RF L CN +KII +QSRC +RF L + ERL+++ +GL +TEGG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ + L +F + K ++ + +GL+ DIV ++ + V + + V L++ + + ++RL+ G ++K+QLE++++ F +R Sbjct: 64 VSIAREIFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPIG---GAPFKIIFLDEADALTADAQSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQGLSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFRLTEGASEKIQLEALLAHFALSR 336
BLAST of DY258611 vs. ExPASy Swiss-Prot
Match: RFCS_METMA (Replication factor C small subunit OS=Methanosarcina mazei GN=rfcS PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 6.512e-42 Identity = 95/276 (34.42%), Postives = 164/276 (59.42%), Query Frame = 3 Query: 9 LAVARKLYGAQ-YHNMILELNSSDDRGIDVVRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQVNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKALNILQSTHM--ASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLALVDIVREV--------TMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLESIISTFTQAR 803 +++AR+++G + ELN+SD+RGID+VR +I++FA T A K++ LDEADA+T DAQ ALRR +EK++ N RF L CN +KII +QSRC +RF L + ERL+++ + + L +T+GG AL+ + GDMRKA+N LQ+ + I+ E +Y T P++I+ + L +F + K ++ + +GL+ DIV ++ + + + + V L++ + + ++RL+ G ++K+QLE++++ F +R Sbjct: 64 VSIAREIFGEDLWRENFTELNASDERGIDIVRNKIKNFAKTAPMG---GAPFKIIFLDEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDFRLTEGASEKIQLEALLAHFALSR 336 The following BLAST results are available for this feature:
BLAST of DY258611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258611 ID=DY258611; Name=DY258611; organism=Citrus clementina; type=EST; length=1111bpback to top |