DY258757

Overview
NameDY258757
Unique NameDY258757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258757_ssr84 microsatellite DY258757_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14845 contig Ccv1_Contig14845:549..1339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14
Identity = 35/79 (44.30%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W  +D +LE  F + G + ++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG +L GR I V+ A++R
Sbjct:    7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG LS+  D+  LET+F + G++ E  VV DRE+ RSRGFGFVT+ + E+  +A+  +NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +VED  A  ++ N  E+ GR ++VN                             +VY+GNL+  V +  L+  F E+GKVL AKV     + +S GFGFV++SS EEV+ AI +LN   L G+ IRV+ A
Sbjct:  134 TVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPY---KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260          

HSP 2 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAE 395
            R+YVGN+   +++  L T+  E G +  A+V+YD+ SGRSR FGFVT  + E+ +  I+ LN  ++ GR I+V++ E
Sbjct:   85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITE 161          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  168 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410
            +YVGNLS+ V + +L  +F E G V   ++  DRE+GR RGFGFV   S  E   AI++L+G +  GR ++V+ A+ R  R
Sbjct:    3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPREDR 83          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            +++VG L++  D+ ALE  F   G + E  VV DRE+ RSRGFGF+T+++ E   +A+ ++NG  L GR IRV  A
Sbjct:    7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  168 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            ++VG+L+  VDD  L   F++    L   V++D ++G SRG+GFV+++S ++  NA+DS+ G DL GR +R++ A  R
Sbjct:  164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  207 ALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410
            +L + F   G+VLE+K++ DRE+ RSRGFGFVT+S+ E + +AI+ +NG +L GR I V+ A++R  R
Sbjct:    2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69          
The following BLAST results are available for this feature:
BLAST of DY258757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GRP1_DAUCA2.627e-1444.30Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
CIRBP_RANCA1.883e-1246.05Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
RRP2_SPIOL2.459e-1236.1530S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
CIRBP_RAT2.718e-1143.42Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE2.718e-1143.42Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR2.718e-1143.42Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
RBPB_ANASP3.550e-1143.21Putative RNA-binding protein rbpB OS=Anabaena sp. ... [more]
RBM3_MOUSE3.550e-1144.74Putative RNA-binding protein 3 OS=Mus musculus GN=... [more]
PUB1_YEAST4.637e-1139.74Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
GRP1_SORBI4.637e-1148.53Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258757 ID=DY258757; Name=DY258757; organism=Citrus clementina; type=EST; length=791bp
CAAGTGTTGAGGATGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAA
CTCGAGGGCCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAG
GGAAGAATTCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTT
CTAGTGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGAT
GATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGC
CAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTG
TGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAAT
GGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAG
GCCACAAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCAGTTGT
TTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTATCAGTG
CTATCAAATCATCGGCTTCAAAGACAGATTCATGATTATTTGTTTTTGCA
TATGCGAAATGCATGTTGCCTTGTTATAATTTCTAACTATCATCATGAGC
CACAGAAATTTTGGAGCTGCATTATTCAGAACAGGATCCTTGCATCTGGC
ATTTTGATAATTCCATCTCTGTGACGCTTGCCAGATGAAGGGTAGCTTGA
GTTGTCTGTCACTAAGTTTTCATCCATGTTCTGAAAACTATAATTGAGAC
AAGAAATGAATATGTAGCCTGAAATTTGACTTGATTTTACA
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