DY258757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.627e-14 Identity = 35/79 (44.30%), Postives = 56/79 (70.89%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401 R +VG L+W +D +LE F + G + ++K++ DRE+GRSRGFGFVT+ + + +AI+ +NG +L GR I V+ A++R Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12 Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392 +++VG LS+ D+ LET+F + G++ E VV DRE+ RSRGFGFVT+ + E+ +A+ +NG + GR IRV A Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392 +VED A ++ N E+ GR ++VN +VY+GNL+ V + L+ F E+GKVL AKV + +S GFGFV++SS EEV+ AI +LN L G+ IRV+ A Sbjct: 134 TVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPY---KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 HSP 2 Score: 69.3218 bits (168), Expect = 2.718e-11 Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAE 395 R+YVGN+ +++ L T+ E G + A+V+YD+ SGRSR FGFVT + E+ + I+ LN ++ GR I+V++ E Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITE 161
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392 +++VG LS+ ++ ALE +F + G++ E VV DRE+ RSRGFGFVT+ + ++ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392 +++VG LS+ ++ ALE +F + G++ E VV DRE+ RSRGFGFVT+ + ++ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392 +++VG LS+ ++ ALE +F + G++ E VV DRE+ RSRGFGFVT+ + ++ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11 Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 3 Query: 168 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +YVGNLS+ V + +L +F E G V ++ DRE+GR RGFGFV S E AI++L+G + GR ++V+ A+ R R Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPREDR 83
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: RBM3_MOUSE (Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11 Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392 +++VG L++ D+ ALE F G + E VV DRE+ RSRGFGF+T+++ E +A+ ++NG L GR IRV A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHA 82
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 31/78 (39.74%), Postives = 52/78 (66.67%), Query Frame = 3 Query: 168 VYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401 ++VG+L+ VDD L F++ L V++D ++G SRG+GFV+++S ++ NA+DS+ G DL GR +R++ A R Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 33/68 (48.53%), Postives = 50/68 (73.53%), Query Frame = 3 Query: 207 ALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +L + F G+VLE+K++ DRE+ RSRGFGFVT+S+ E + +AI+ +NG +L GR I V+ A++R R Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGR 69 The following BLAST results are available for this feature:
BLAST of DY258757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258757 ID=DY258757; Name=DY258757; organism=Citrus clementina; type=EST; length=791bpback to top |