DY258757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.478e-41 Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 S E+VEAA QQFNGYEL+GR LRVN NRVYVGNL+WGVD ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 137 SKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSS--NRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273 HSP 2 Score: 79.337 bits (194), Expect = 2.627e-14 Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQ 416 +++VGNL + D AL LF G V +V+YD+ +GRSRGFGFVT SS EEV+ A NG +L GRA+RV+ + P++R+ Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRE 170
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.300e-41 Identity = 93/143 (65.03%), Postives = 102/143 (71.33%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXX----NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 S E+VEAA QQFNGYEL+GR LRVN NRVYVGNL+WGVD ALETLF EQGKV++AKVVYDR+SGRSRGFGFVTYSSAEEV+NAI+SL+GVDL GRAIRVS AEARP RRQF Sbjct: 137 SKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279 HSP 2 Score: 79.337 bits (194), Expect = 2.627e-14 Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF*AVAETS 440 +++VGNL + D AL LF G V +V+YD+ +GRSRGFGFVT SS EEV+ A NG +L GRA+RV+ + P++R+ + E S Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN-SGPPPEKRENSSFRENS 178
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 1.059e-39 Identity = 88/149 (59.06%), Postives = 101/149 (67.79%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 SV +VEAAAQQFNGYEL+GRPLRVN NRVYVGNLSWGVDD+ALE+LF EQGKV+EA+V+YDR+SGRS+GFGFVTY S++EV NAI SL+G DL GR IRVS AEARP RRQ+ Sbjct: 141 SVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289 HSP 2 Score: 77.411 bits (189), Expect = 9.982e-14 Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +++VGNL + VD L LF G V +V+YD+ +GRSRGFGFVT SS EV+ A NG +L GR +RV+ P+R Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKR 173
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 6.425e-37 Identity = 87/154 (56.49%), Postives = 100/154 (64.94%), Query Frame = 3 Query: 9 EDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 E+VEAA QQFNGYE++GR +RVN NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSSA+EV++AIDSLNG+DL GR+IRVS AE RP RRQF Sbjct: 140 EEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP-RRQF 292 HSP 2 Score: 80.1073 bits (196), Expect = 1.540e-14 Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +++VGNL + VD AL LF G V +V+YD+ SGRSRGFGFVT S+ EEV+ A NG ++ GRAIRV+ A +R Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKR 170
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.096e-36 Identity = 87/154 (56.49%), Postives = 100/154 (64.94%), Query Frame = 3 Query: 9 EDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 E+VEAA QQFNGYE++GR +RVN NRVYVGNLSWGVDDLAL+ LF EQG V++AKVVYDR+SGRSRGFGFVTYSS++EV++AIDSLNGVDL GR+IRVS AE RP RRQF Sbjct: 139 EEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP-RRQF 291 HSP 2 Score: 79.337 bits (194), Expect = 2.627e-14 Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +++VGNL + VD AL LF G V +V+YD+ +GRSRGFGFVT S+ EEV+ A NG ++ GRAIRV+ A +R Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKR 169
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 5.269e-31 Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 3 Query: 162 NRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 NR+YVGNLSWGVDD+ALE LF EQGKV+EA+V+YDR+SGRS+GFGFVT SS++EV AI+SLNG DL GR IRVS AEARP R QF Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRGQF 342 HSP 2 Score: 79.337 bits (194), Expect = 2.627e-14 Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQ 416 +++VGNLS+ VD L LF G V +V+YD+ +GRSRGFGFVT S+A EV+ A NG + GR +RV+ P+R + Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREE 183
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.300e-28 Identity = 69/139 (49.64%), Postives = 86/139 (61.87%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 SV++ E A ++FN Y+L GR L VN RVYVGNL W VD+ LE LF E GKV+EA+VVYDRE+GRSRGFGFVT S +E++ AI +L+G +L GRAIRV+VAE RP RR + Sbjct: 200 SVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF---------RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 329 HSP 2 Score: 75.485 bits (184), Expect = 3.793e-13 Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +++VGNL++ V+ AL LF + G V A+V+Y+RE+ +SRGFGFVT SS +E + A++ N DL GR + V+ A R R Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR 232
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.485e-25 Identity = 66/136 (48.53%), Postives = 82/136 (60.29%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +VE+ E A + NGY+++GR L VN RVYVGNL W VD LE LF E GKV+ A+VV DRE+GRSRGFGFVT SS EV++AI +L+G L GRA+RV+VAE RP+R Sbjct: 105 TVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC---------RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRR 231 HSP 2 Score: 74.7146 bits (182), Expect = 6.470e-13 Identity = 39/84 (46.43%), Postives = 56/84 (66.67%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR--PQR 410 +++VGNL + VD L +F G V A+V+Y+RE+ RSRGFGFVT S+ EE + A++ LNG D+ GR + V+ A R P+R Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.533e-25 Identity = 63/139 (45.32%), Postives = 82/139 (58.99%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 +VE+ E A + +N Y++ GR L VN R+YVGN+ WG+DD LE LF E GKV+ A+VVYDRE+GRSRGFGFVT +S E+ +AI +L+G L GR IRV+VAE R +R F Sbjct: 186 TVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSY---------RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNTF 315 HSP 2 Score: 72.0182 bits (175), Expect = 4.194e-12 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +++VGNL + VD L LF + G V A+V+Y+R++ +SRGFGFVT S+ EE + A++ N D+ GR + V+ A R +R Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23 Identity = 60/139 (43.17%), Postives = 80/139 (57.55%), Query Frame = 3 Query: 3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQRRQF 419 +VE+ + A + ++ Y+L GR L VN R+YVGN+ W +DD LE +F E GKV+ A+VV+DRESGRSRGFGFVT SS E+ AI +L+G L GR IRV+ AE RP+R + Sbjct: 147 TVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTY---------RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNTY 276 HSP 2 Score: 74.3294 bits (181), Expect = 8.450e-13 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 3 Query: 165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARPQR 410 +++VGNL + +D L LF++ G V A+V+Y+RE+ RSRGFGFVT S+ EE D A++ + DL GR + V+ A R R Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSR 179 The following BLAST results are available for this feature:
BLAST of DY258757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >DY258757 ID=DY258757; Name=DY258757; organism=Citrus clementina; type=EST; length=791bpback to top |