DY259907

Overview
NameDY259907
Unique NameDY259907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1349 contig Ccv1_Contig1349:1..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.118e-27
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 1
Query:   49 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAY 321
            +YSFSLTTFSPSGKLVQIE+AL AV  G T+LGIKA+NG+V+ATEKK  S L D SS+ KI  +TPNIG+VYSGMGPD+RV V ++  +++
Sbjct:    4 RYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSH 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.872e-26
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   43 DSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            DS YSFSLTTFSPSGKLVQIEHAL A  SG +++GIKA NGVV+ TEKKL S LVD +SV KI  +T NIG+VY+GMGPD RV ++K+
Sbjct:    2 DSDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHS-LVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKA 88          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.999e-25
Identity = 61/91 (67.03%), Postives = 72/91 (79.12%), Query Frame = 1
Query:   49 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAY 321
            +YSFSLTTFSPSGKL QI++ALTAV  G TSLGIKA+NGVVIATEKK  S L    ++ K+  LTP+IG VYSGMGPD+RV V KS  +A+
Sbjct:    4 RYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAH 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.923e-25
Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   49 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            +Y+FSLTTFSP+GKLVQIE+AL AV +G TS+GIKA++GVV+ATEKK  S L   +S+ K+ ++TP+IG+VYSGMGPDFRV V KS  +A
Sbjct:    4 KYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVA 93          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.400e-24
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M   +YSFSLTTFSPSGKLVQ+E+AL AV  G  S+GI ASNGVVIATE K  S L ++ SVH+++ +  +IG+VYSGMGPD+R+ V+++  +A
Sbjct:    1 MATERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.902e-21
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTP 354
            MGD  Y FSLTTFSPSGKL+QIE+AL AV +GQ S+G++A +GVV+ATE  + S+L D+    K++ ++ +IG VYSGMGPDFR+ V+K+  +A       G + P
Sbjct:    1 MGD-HYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE-NVGSVLTDDQP--KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMP 102          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.359e-20
Identity = 48/84 (57.14%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            S+ S+ LTTFSPSG+LVQIE+A TA   G T+LG+KA++GVVIA EKK  S L D  ++HK+ +L  ++G  YSG+GPD RV V
Sbjct:    2 SESSYGLTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLV 85          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.200e-15
Identity = 41/84 (48.81%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            ++Y   + TFSP G++ QIE+A+ A+  G TSLGI+  + V+IA EK++PS LVD SSV+KI  +  +IG V SGM  D R+ V
Sbjct:    6 TEYDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILV 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.756e-13
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVK 360
            Y  + T FSP G L Q+ +A  AV  G TSLGIK + GVVIA EK+    LVD   + KI  +  +IGV ++GMG D R+ +  +     R+    G   PV+
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVE 114          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.911e-13
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   34 KMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            + G   Y  ++T FSP G+L Q+E+A  AV  G T+LG+K SNGV++ ++KK+ S L++++S+ KIQ +   +  V SG+  D RV +
Sbjct:    2 QQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLI 89          
The following BLAST results are available for this feature:
BLAST of DY259907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PSA2_NEUCR8.118e-2765.93Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA2_DICDI6.872e-2669.32Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA2_YEAST1.999e-2567.03Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA2_SCHPO9.923e-2564.44Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA2_DROME8.400e-2458.51Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA2_CAEEL3.902e-2151.89Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA2_TRYBB7.359e-2057.14Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA5_TRYBB3.200e-1548.81Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSMA_AERPE1.756e-1340.78Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSMA_THEVO3.911e-1340.91Proteasome subunit alpha OS=Thermoplasma volcanium... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259907 ID=DY259907; Name=DY259907; organism=Citrus clementina; type=EST; length=955bp
CGATTCGATCTCCTTTTCTTTTTTAATTTAAAAAAAATGGGTGATAGTCA
GTATTCGTTCTCTTTGACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGA
TTGAACATGCCTTAACAGCTGTTGGATCCGGCCAAACATCTCTGGGAATC
AAAGCTTCTAATGGTGTTGTCATTGCTACGGAGAAGAAACTACCGTCTAT
TTTGGTTGATGAATCATCAGTTCATAAGATTCAGTCATTAACACCAAACA
TTGGAGTTGTATACAGTGGGATGGGTCCCGATTTCCGGGTCTGTGTACGA
AAAAGCACCACCCTAGCCTACCGGAACGCCCACTAACAGGGGACCCAAAC
CCCCGTAAAAAAATTTAAGAGGTACCGCTGCGGGCACTGGGGATAACACG
CAAAACCGAAAATTGTCAACGAGTTTGCATCTCAAATATATGGAACCTTT
TGCGAAAAGGGTGGACCTTAACTTATGACCGACAAAAAAACTCTCACTTC
TATTTGATTCAGCAAAAGGGTGGGGAGGTTTAAATGAAGAGCACCTCTCA
CAAACTCGAATGAGCTGGTATAAAAAAAATCACACAGATCTCAAAAAACC
GGGGTCTTATTCCGCGCAACACTCCAACGCACTGTAAAATAGGACTGTGA
ACCCTTTCTATAAACAAAATACAAAAAATCATCCCCCCCTACAGAAACTA
AGAAAAATTTCTCAAGAACCGTCACCCACTACCCACACACCCCACGAAAA
AACATATCACTTCACCTGCACACAAGAGACTAGTCTGCAGCTCGGAATAG
AGAAAAAAGGGTCCTTGACAGCAAGACTTCTGGCAGCTCCCTGATACAAA
ATTTTTAGTATACTTTACCACAAAACCAGTGATCAACATAGTTCCCCGAT
AACTAGATAGACGAAATTTTTAACATAAATACAAACACCAACACAATCCT
CCCCC
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