DY259907

Overview
NameDY259907
Unique NameDY259907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1349 contig Ccv1_Contig1349:1..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.671e-13
Identity = 36/88 (40.91%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   34 KMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            + G   Y  ++T FSP G+L Q+E+A  AV  G T+LG+K +NGV++ ++KK+ S L++++S+ KIQ +   +  V SG+  D RV V
Sbjct:    2 QQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLV 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.713e-13
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   28 LKKMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            ++ + ++ Y  ++T FSP G+L Q+E+A  AV  G TS+GIK S G+V+A +K+  S LV+ +S+ KI  +  +IG   SG+  D R  V ++   A  N
Sbjct:    1 MQPLQNAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQIN 100          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.713e-13
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y   + TFSP G+L Q+E+A+ AV  G TS+GIK S GV++A EK+  S L+   ++ KI  +  +IGV ++G+  D R  V ++
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERA 92          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.138e-12
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   34 KMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            + G   Y  ++T FSP G+L Q+E+A  AV  G T+LGIK  +GV + +EKK+ S LV+++S+ KIQ +   +  V SG+  D RV +
Sbjct:    2 QQGQMAYDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVADARVLI 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.138e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R  V
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLV 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.138e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R  V
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLV 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.486e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K   GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R  V
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLV 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.486e-12
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            ++Y   + TFSP G+L Q+E+A+ A+  G T++G+K  +GVV+A EK++ S L++ SSV KI  +  +IG   SG+  D R  V
Sbjct:    6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLV 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.311e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y   + TFSP G+L Q+E+A+ A+  G T++GI+ S GV +A EK++ S L++ SS+ KI  +  +IG   SG+  D +  + K+
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 3.311e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y   + TFSP G+L Q+E+A+ A+  G T++GI+ S GV +A EK++ S L++ SS+ KI  +  +IG   SG+  D +  + K+
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92          
The following BLAST results are available for this feature:
BLAST of DY259907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PSMA_THEAC6.671e-1340.91Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSMA_METS38.713e-1338.00Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA5_CAEEL8.713e-1341.38Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSMA_PICTO1.138e-1242.05Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSA5B_ARATH1.138e-1241.67Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH1.138e-1241.67Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SOYBN1.486e-1241.67Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA5_ORYSJ1.486e-1241.67Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSA5_MOUSE3.311e-1239.08Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN3.311e-1239.08Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259907 ID=DY259907; Name=DY259907; organism=Citrus clementina; type=EST; length=955bp
CGATTCGATCTCCTTTTCTTTTTTAATTTAAAAAAAATGGGTGATAGTCA
GTATTCGTTCTCTTTGACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGA
TTGAACATGCCTTAACAGCTGTTGGATCCGGCCAAACATCTCTGGGAATC
AAAGCTTCTAATGGTGTTGTCATTGCTACGGAGAAGAAACTACCGTCTAT
TTTGGTTGATGAATCATCAGTTCATAAGATTCAGTCATTAACACCAAACA
TTGGAGTTGTATACAGTGGGATGGGTCCCGATTTCCGGGTCTGTGTACGA
AAAAGCACCACCCTAGCCTACCGGAACGCCCACTAACAGGGGACCCAAAC
CCCCGTAAAAAAATTTAAGAGGTACCGCTGCGGGCACTGGGGATAACACG
CAAAACCGAAAATTGTCAACGAGTTTGCATCTCAAATATATGGAACCTTT
TGCGAAAAGGGTGGACCTTAACTTATGACCGACAAAAAAACTCTCACTTC
TATTTGATTCAGCAAAAGGGTGGGGAGGTTTAAATGAAGAGCACCTCTCA
CAAACTCGAATGAGCTGGTATAAAAAAAATCACACAGATCTCAAAAAACC
GGGGTCTTATTCCGCGCAACACTCCAACGCACTGTAAAATAGGACTGTGA
ACCCTTTCTATAAACAAAATACAAAAAATCATCCCCCCCTACAGAAACTA
AGAAAAATTTCTCAAGAACCGTCACCCACTACCCACACACCCCACGAAAA
AACATATCACTTCACCTGCACACAAGAGACTAGTCTGCAGCTCGGAATAG
AGAAAAAAGGGTCCTTGACAGCAAGACTTCTGGCAGCTCCCTGATACAAA
ATTTTTAGTATACTTTACCACAAAACCAGTGATCAACATAGTTCCCCGAT
AACTAGATAGACGAAATTTTTAACATAAATACAAACACCAACACAATCCT
CCCCC
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