DY259907

Overview
NameDY259907
Unique NameDY259907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.311e-12
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y   + TFSP G+L Q+E+A+ A+  G T++GI+ S GV +A EK++ S L++ SS+ KI  +  +IG   SG+  D +  + K+
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.324e-12
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRC 381
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK ++GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RV + ++   A  N    G    V+   +  C
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKIC 119          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.324e-12
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRCGH 387
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA +GVV+  +K++ S L++ SS+ KI  +  +IGV  SG+  D R  V ++      N      +  V+   +  C H
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDH 120          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRCGH 387
            Y  ++T FSP G+L Q+E+A  AV  G T++GIK ++G+V+  +K++ S L++ SS+ KI  +  +IGV  SG+  D R  V ++   +  N      Q  V+   +  C H
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKIDNHIGVASSGLVGDARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDH 120          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRC 381
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RV + ++   A  N    G    V+   +  C
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEAQMNRVSYGEAITVEALAKKIC 119          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRC 381
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RV + ++   A  N    G    V+   +  C
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKIC 119          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.648e-12
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRC 381
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RV + ++   A  N    G    V+   +  C
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKIC 119          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.376e-12
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRC 381
            S Y  ++T FSP G+L Q+E+A  AV  G T++GIK  +GVV+A ++++ S L+D SS+ KI  +  +I    SG+  D RV + ++   A  N    G    V+   +  C
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKIC 119          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.376e-12
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA++GVV+  +K++ S LV+  S+ KI  +  +IG   SG+  D R  V ++   A  N
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVN 98          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.634e-12
Identity = 36/100 (36.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   28 LKKMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            ++ +  + Y  ++T FSP G+L Q+E+A  AV  G TSLG+K+  G+V+  +K+  S LV+  S+ KI  +  +IG   SG+  D R  + K+   A  N
Sbjct:    1 MQPLQSAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQIN 100          
The following BLAST results are available for this feature:
BLAST of DY259907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PSA5_BOVIN3.311e-1239.08Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSMA_METM64.324e-1235.71Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METB64.324e-1235.71Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_METPE5.648e-1234.82Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_METMP5.648e-1235.71Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM75.648e-1235.71Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM55.648e-1235.71Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METVS7.376e-1235.71Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METTE7.376e-1240.22Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METTH9.634e-1236.00Proteasome subunit alpha OS=Methanobacterium therm... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259907 ID=DY259907; Name=DY259907; organism=Citrus clementina; type=EST; length=955bp
CGATTCGATCTCCTTTTCTTTTTTAATTTAAAAAAAATGGGTGATAGTCA
GTATTCGTTCTCTTTGACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGA
TTGAACATGCCTTAACAGCTGTTGGATCCGGCCAAACATCTCTGGGAATC
AAAGCTTCTAATGGTGTTGTCATTGCTACGGAGAAGAAACTACCGTCTAT
TTTGGTTGATGAATCATCAGTTCATAAGATTCAGTCATTAACACCAAACA
TTGGAGTTGTATACAGTGGGATGGGTCCCGATTTCCGGGTCTGTGTACGA
AAAAGCACCACCCTAGCCTACCGGAACGCCCACTAACAGGGGACCCAAAC
CCCCGTAAAAAAATTTAAGAGGTACCGCTGCGGGCACTGGGGATAACACG
CAAAACCGAAAATTGTCAACGAGTTTGCATCTCAAATATATGGAACCTTT
TGCGAAAAGGGTGGACCTTAACTTATGACCGACAAAAAAACTCTCACTTC
TATTTGATTCAGCAAAAGGGTGGGGAGGTTTAAATGAAGAGCACCTCTCA
CAAACTCGAATGAGCTGGTATAAAAAAAATCACACAGATCTCAAAAAACC
GGGGTCTTATTCCGCGCAACACTCCAACGCACTGTAAAATAGGACTGTGA
ACCCTTTCTATAAACAAAATACAAAAAATCATCCCCCCCTACAGAAACTA
AGAAAAATTTCTCAAGAACCGTCACCCACTACCCACACACCCCACGAAAA
AACATATCACTTCACCTGCACACAAGAGACTAGTCTGCAGCTCGGAATAG
AGAAAAAAGGGTCCTTGACAGCAAGACTTCTGGCAGCTCCCTGATACAAA
ATTTTTAGTATACTTTACCACAAAACCAGTGATCAACATAGTTCCCCGAT
AACTAGATAGACGAAATTTTTAACATAAATACAAACACCAACACAATCCT
CCCCC
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