DY259907

Overview
NameDY259907
Unique NameDY259907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.634e-12
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRCGH 387
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA++GVV+  +K++ S LV+  S+ KI  +  +IG   SG+  D R  V ++   A  N         V+   +  C H
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDH 120          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.634e-12
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKFKRYRCGH 387
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA++GVV+  +K++ S LV+  S+ KI  +  +IG   SG+  D R  V ++   A  N         V+   +  C H
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDH 118          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.258e-11
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G+L Q+E+A  AV  G T++GIKA++GVV+  +K++ S LV+  S+ KI  +  +IG   SG+  D R  V ++   A  N
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVN 100          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.258e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            Y  ++T FSP G+L Q+E+A  AV  G T+LGIK   GVV+  +K++ S L++  S+ K+  +  +IG   +G+  D RV V ++
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 33/92 (35.87%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ +GVVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
The following BLAST results are available for this feature:
BLAST of DY259907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PSMA_METBF9.634e-1235.71Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC9.634e-1235.71Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METMA1.258e-1140.22Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METKA1.258e-1138.82Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_SULIY1.643e-1135.87Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN1.643e-1135.87Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.643e-1135.87Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL1.643e-1135.87Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK1.643e-1135.87Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA1.643e-1135.87Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259907 ID=DY259907; Name=DY259907; organism=Citrus clementina; type=EST; length=955bp
CGATTCGATCTCCTTTTCTTTTTTAATTTAAAAAAAATGGGTGATAGTCA
GTATTCGTTCTCTTTGACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGA
TTGAACATGCCTTAACAGCTGTTGGATCCGGCCAAACATCTCTGGGAATC
AAAGCTTCTAATGGTGTTGTCATTGCTACGGAGAAGAAACTACCGTCTAT
TTTGGTTGATGAATCATCAGTTCATAAGATTCAGTCATTAACACCAAACA
TTGGAGTTGTATACAGTGGGATGGGTCCCGATTTCCGGGTCTGTGTACGA
AAAAGCACCACCCTAGCCTACCGGAACGCCCACTAACAGGGGACCCAAAC
CCCCGTAAAAAAATTTAAGAGGTACCGCTGCGGGCACTGGGGATAACACG
CAAAACCGAAAATTGTCAACGAGTTTGCATCTCAAATATATGGAACCTTT
TGCGAAAAGGGTGGACCTTAACTTATGACCGACAAAAAAACTCTCACTTC
TATTTGATTCAGCAAAAGGGTGGGGAGGTTTAAATGAAGAGCACCTCTCA
CAAACTCGAATGAGCTGGTATAAAAAAAATCACACAGATCTCAAAAAACC
GGGGTCTTATTCCGCGCAACACTCCAACGCACTGTAAAATAGGACTGTGA
ACCCTTTCTATAAACAAAATACAAAAAATCATCCCCCCCTACAGAAACTA
AGAAAAATTTCTCAAGAACCGTCACCCACTACCCACACACCCCACGAAAA
AACATATCACTTCACCTGCACACAAGAGACTAGTCTGCAGCTCGGAATAG
AGAAAAAAGGGTCCTTGACAGCAAGACTTCTGGCAGCTCCCTGATACAAA
ATTTTTAGTATACTTTACCACAAAACCAGTGATCAACATAGTTCCCCGAT
AACTAGATAGACGAAATTTTTAACATAAATACAAACACCAACACAATCCT
CCCCC
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