DY259907

Overview
NameDY259907
Unique NameDY259907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 34/91 (37.36%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            S+Y   ++TFSP G+L Q+E++L A+  G T++GI    GVV+  EK+  S L++  S+ KI  +  +IG   SG+  D R  +  + T A
Sbjct:    6 SEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAA 96          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.146e-11
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV 297
            M  S+Y   + TFSP G+L Q+E+A+ A+  G T++G+K  + VV+  EK+L S L++  SV K+  +  +IG   SG+  D R  +
Sbjct:    3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTII 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.803e-11
Identity = 42/105 (40.00%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRNAH*QGTQTPVKKF 366
            Y  S + FSP G+  Q+E+A+ AV +G TS+GIK ++GVV A EK + S L+      KIQ +  +IG VYSG+ PD R  V +    A        T  P+  F
Sbjct:    8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAF 112          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   28 LKKMGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQ-TSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPD 282
            + + G + Y  S+  FSP GKL QIE+A  A+ +G  TS+GI+  + VV+AT+KK+P  L+D  SV  +  LT  IG V +G+ PD
Sbjct:    1 MSRSGTAGYDMSII-FSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPD 85          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 35/93 (37.63%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV--RKSTTLAYR 324
            Y  ++T FSP G L Q+++A  AV  G T+LG+K  N VVI  EKK  S L+D  S+ K+  L  ++G  ++G+  D R+ +   ++++L +R
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHR 102          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y   + TFSP G+L Q+E+A+     G T++GI+ S GV +A EK++ S L++ SS+ KI  +  +IG   SG+  D +  + K+
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.781e-11
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y   + TFSP G+L Q+E+A+ A+  G T++GI    GVV+A EK++ S L+  S+V KI  +  +IG   SG+  D R  + ++
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERA 92          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCV----RKSTTLAYRNAH*QGTQTPVKKFKRY 375
            Y   +T FSP G+L Q+E+A  AV  G  S+G++ S+GVV+A +K++ S L++ SSV KI     +IG+  +G   D R  +    R++     R     G +T  K+   Y
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDY 121          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 34/87 (39.08%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   46 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            S+Y  ++T FSP G L Q+E+A  AV  G T++GI+ +N VV+  EKK  + L DE +V KI +L  ++ + ++G+  D RV + ++
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRA 89          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 32/92 (34.78%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   52 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLAYRN 327
            Y  ++T FSP G L Q+++A  AV  G T++GIK+ + VVIA+EK+    L+D  S+ K+  +  ++G  ++G+  D RV +  +  +A ++
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQH 101          
The following BLAST results are available for this feature:
BLAST of DY259907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PSA5_YEAST1.643e-1137.36Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA5_SCHPO2.146e-1137.93Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA3_YEAST2.803e-1140.00Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA6_DICDI3.661e-1144.19Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSMA_METS54.781e-1137.63Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA5_RAT4.781e-1137.93Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA5_DROME4.781e-1139.08Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSMA1_HALMA6.244e-1134.82Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA7L_MACFA6.244e-1139.08Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSMA_SULSO8.155e-1134.78Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259907 ID=DY259907; Name=DY259907; organism=Citrus clementina; type=EST; length=955bp
CGATTCGATCTCCTTTTCTTTTTTAATTTAAAAAAAATGGGTGATAGTCA
GTATTCGTTCTCTTTGACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGA
TTGAACATGCCTTAACAGCTGTTGGATCCGGCCAAACATCTCTGGGAATC
AAAGCTTCTAATGGTGTTGTCATTGCTACGGAGAAGAAACTACCGTCTAT
TTTGGTTGATGAATCATCAGTTCATAAGATTCAGTCATTAACACCAAACA
TTGGAGTTGTATACAGTGGGATGGGTCCCGATTTCCGGGTCTGTGTACGA
AAAAGCACCACCCTAGCCTACCGGAACGCCCACTAACAGGGGACCCAAAC
CCCCGTAAAAAAATTTAAGAGGTACCGCTGCGGGCACTGGGGATAACACG
CAAAACCGAAAATTGTCAACGAGTTTGCATCTCAAATATATGGAACCTTT
TGCGAAAAGGGTGGACCTTAACTTATGACCGACAAAAAAACTCTCACTTC
TATTTGATTCAGCAAAAGGGTGGGGAGGTTTAAATGAAGAGCACCTCTCA
CAAACTCGAATGAGCTGGTATAAAAAAAATCACACAGATCTCAAAAAACC
GGGGTCTTATTCCGCGCAACACTCCAACGCACTGTAAAATAGGACTGTGA
ACCCTTTCTATAAACAAAATACAAAAAATCATCCCCCCCTACAGAAACTA
AGAAAAATTTCTCAAGAACCGTCACCCACTACCCACACACCCCACGAAAA
AACATATCACTTCACCTGCACACAAGAGACTAGTCTGCAGCTCGGAATAG
AGAAAAAAGGGTCCTTGACAGCAAGACTTCTGGCAGCTCCCTGATACAAA
ATTTTTAGTATACTTTACCACAAAACCAGTGATCAACATAGTTCCCCGAT
AACTAGATAGACGAAATTTTTAACATAAATACAAACACCAACACAATCCT
CCCCC
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