DY260002

Overview
NameDY260002
Unique NameDY260002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1024
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260002_ssr14 microsatellite DY260002_ssr14:14..33. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260002_ssr39 microsatellite DY260002_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 275.018 bits (702), Expect = 4.831e-73
Identity = 142/268 (52.99%), Postives = 181/268 (67.54%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEILCXXXXXXXXXXXXIN*SRP*RWWGW*KSNGSNPWA*KTS-----P*TPPAFPNPLGGSPPKRNPALWAPPGPEKTPDCRGRFPKRTGGLFSFLN*GP 998
            STAIL +K  PNRL+VDE+IN+DNS++++    M++LQ FRGDTVL+KGKKR++ VC+VLSD+ C + K+R+N+VVR+NLRVRLGDV+S+ PCPDVKYG+RVH+LPIDDT+EG+TGNLF+ YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I C                      G+    G      +       P   PA    +G  PP R   L+ PPG  KT   R      TG  F  +N GP
Sbjct:   13 STAILKQKSRPNRLIVDESINEDNSMVSLSQAKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRVHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDE-----EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP-RGILLYGPPGTGKTLIARA-VANETGAFFFLIN-GP 272          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 275.018 bits (702), Expect = 4.831e-73
Identity = 142/268 (52.99%), Postives = 180/268 (67.16%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEILCXXXXXXXXXXXXIN*SRP*RWWGW*KSNGSNPWA*KTS-----P*TPPAFPNPLGGSPPKRNPALWAPPGPEKTPDCRGRFPKRTGGLFSFLN*GP 998
            STAIL +K  PNRL+VDEAIN+DNSV+++    M++LQ FRGDTVL+KGKKR++ VC+VLSD+ C + K+R+N+VVR+NLRV LGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+ YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I C                      G+    G      +       P   PA    +G  PP R   L+ PPG  KT   R      TG  F  +N GP
Sbjct:   13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDE-----EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP-RGILLYGPPGTGKTLIARA-VANETGAFFFLIN-GP 272          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 4.831e-73
Identity = 142/268 (52.99%), Postives = 180/268 (67.16%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEILCXXXXXXXXXXXXIN*SRP*RWWGW*KSNGSNPWA*KTS-----P*TPPAFPNPLGGSPPKRNPALWAPPGPEKTPDCRGRFPKRTGGLFSFLN*GP 998
            STAIL +K  PNRL+VDEAIN+DNSV+++    M++LQ FRGDTVL+KGKKR++ VC+VLSD+ C + K+R+N+VVR+NLRV LGDV+S+ PCPDVKYG+R+H+LPIDDT+EG+TGNLF+ YLKPYF+E+YRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I C                      G+    G      +       P   PA    +G  PP R   L+ PPG  KT   R      TG  F  +N GP
Sbjct:   13 STAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDE-----EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP-RGILLYGPPGTGKTLIARA-VANETGAFFFLIN-GP 272          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 4.842e-65
Identity = 116/170 (68.24%), Postives = 144/170 (84.71%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEI 719
            +TAIL RKK  N L+VD+AINDDNSVI ++ NTM+KL+ FRGDTVLVKGKKRKDTV +VL D+  E+   R+N+VVR+NLR+RLGD+V++HPCPD+KY  R+ +LPI DTIEG+TGNLFD +LKPYF+E+YRPVRKGD F+VRGGMR VEFKV++ +P EY VVA DT I
Sbjct:   23 ATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVKGKKRKDTVLIVLIDDELEDGACRINRVVRNNLRIRLGDLVTIHPCPDIKYATRISVLPIADTIEGITGNLFDVFLKPYFVEAYRPVRKGDHFVVRGGMRQVEFKVVDVEPEEYAVVAQDTII 192          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.281e-65
Identity = 110/172 (63.95%), Postives = 141/172 (81.98%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEILC 725
            +TAIL RK  PNRL+V+EA NDDNSV+++    M++LQ FRGDTV++KGK+RK+TVC+VLSD+ C + K+R+N+VVR+NL V L DVVSV  CPDVKYG+RV ILPID++ EGVTGNLF+ YLKPYF+E+YRP+  GD F+VR  MR +EFKV+ TDP  YC+VAP+T I C
Sbjct:   10 ATAILKRKDRPNRLIVEEAQNDDNSVVSLSQAKMDELQLFRGDTVILKGKRRKETVCIVLSDDTCPDEKIRMNRVVRNNLCVHLSDVVSVQSCPDVKYGKRVRILPIDESTEGVTGNLFEIYLKPYFLEAYRPIHMGDNFIVRAAMRPIEFKVVLTDPEPYCIVAPETVIFC 181          

HSP 2 Score: 25.0238 bits (53), Expect = 6.281e-65
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 1
Query:  748 EDEERLIEVGHEDGGGGKKAMA 813
            E+EE L  VG++D GG +K +A
Sbjct:  190 EEEESLNAVGYDDIGGCRKQLA 211          

HSP 3 Score: 25.0238 bits (53), Expect = 6.281e-65
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  863 KPIGGKPPQKESRLMGPPGSGK 928
            K IG KPP +   + GPPG+GK
Sbjct:  228 KAIGVKPP-RGILMYGPPGTGK 248          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 7.731e-63
Identity = 110/170 (64.71%), Postives = 143/170 (84.12%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEI 719
            +TAIL +K+ PN LVVD+A NDDNSVIT+  NTME LQ FRGDTV+VKGK+RKDTV +VL+DE  E+   R+N+VVR+NLRVRLGD+V+++PCPD+KY  R+ +LP+ DT+EG+TG+LFD YLKPYF+E+YRP+RKGDLF+VRG MR VEFKV++  P E+ +V+ DT I
Sbjct:   33 ATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTII 202          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.750e-60
Identity = 105/170 (61.76%), Postives = 138/170 (81.18%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEI 719
            STAIL +KK PN L+V +A+NDDNS I++  NTM+ L  FRGDTV V+GKKRK+TV +VL+D+  ++   R+N+VVR NLRV+ GD+++VHPCPD+KY +R+ +LPI DT+EG+TG+LFD YL PYF + YRPV++GDLF VRGGMR VEFKV+E DP E+ +VAPDT I
Sbjct:   38 STAILKKKKKPNSLIVTDAVNDDNSTISLSNNTMDTLGLFRGDTVTVRGKKRKETVLIVLADDDLDDGSARINRVVRHNLRVKHGDIITVHPCPDIKYAKRIAVLPIADTVEGLTGSLFDVYLAPYFRDGYRPVKQGDLFTVRGGMRQVEFKVVEVDPPEFGIVAPDTII 207          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: TERA1_CAEEL (Transitional endoplasmic reticulum ATPase homolog 1 OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.782e-59
Identity = 104/170 (61.18%), Postives = 138/170 (81.18%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEI 719
            STAIL  K  PNRL+VD++  DDNSVI +    M++L  FRGD V++KGKKRK++V +++SDE C   KVR+N+VVR+NLR+RLGDVVS+ P P++ YG R+H+LPIDDTIEG+TGNLFD +LKPYF+E+YRP+ KGD+F V+  MR+VEFKV+ET+P   C+V+PDT I
Sbjct:   19 STAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGLTGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMI 188          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.410e-59
Identity = 100/170 (58.82%), Postives = 137/170 (80.59%), Query Frame = 3
Query:  210 STAILDRKKSPNRLVVDEAINDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEI 719
            +TAIL  KK PNRL++D++ NDDNS++ +    M++L  FRGD+V++KGKKR++TV +VL+ + C   K+++NKVVR+NLR RLGDVVS+     ++YG+RVH+LPIDDTIEG+TGNLFD +L+PYF ++YRPV KGD+F V+  MR+VEFKV+ETDP   C+VAPDT I
Sbjct:   19 ATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGLTGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVI 187          

HSP 2 Score: 27.335 bits (59), Expect = 7.410e-59
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  748 EDEERLIEVGHEDGGGGKKAMA 813
            E+EE L EVG++D GG +K +A
Sbjct:  198 EEEEALNEVGYDDLGGVRKQLA 219          

HSP 3 Score: 26.1794 bits (56), Expect = 7.410e-59
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  863 KPIGGKPPQKESRLMGPPGSGK 928
            K IG KPP +   L GPPG+GK
Sbjct:  236 KAIGVKPP-RGILLFGPPGTGK 256          
BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.204e-17
Identity = 47/156 (30.13%), Postives = 88/156 (56.41%), Query Frame = 3
Query:  207 YSTAILDRKKSPNRLVVDEAINDDNSV-ITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCP-DVKYGRRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKV 668
            +STAIL+ K     +V D+  +   +  + +HP T+ +L+ F  D V + GKK+ + +   ++ E      + + +  R NLR+R+ D V ++    D+    +++ LPI DT+E + GN+FD +++P+   ++ P+  G ++ V  G+  VEFKV
Sbjct:   10 FSTAILESKTKNTLIVCDKDCSKLRTYQVGLHPTTLNELELFESDYVRILGKKKAELIFSTVALESVPPRHIAIVRDGRFNLRIRITDTVKLYRVDKDIPVVSKLNFLPIKDTVENIRGNIFDEFVRPFLDFNFMPLTTGSIYGVTSGLGRVEFKV 165          
The following BLAST results are available for this feature:
BLAST of DY260002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TERA_XENLA4.831e-7352.99Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_PIG4.831e-7352.99Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_BOVIN4.831e-7352.99Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
CDC48_YEAST4.842e-6568.24Cell division control protein 48 OS=Saccharomyces ... [more]
TERA_DROME6.281e-6563.95Transitional endoplasmic reticulum ATPase TER94 OS... [more]
CDC48_SCHPO7.731e-6364.71Cell division cycle protein 48 OS=Schizosaccharomy... [more]
CDC48_EMENI2.750e-6061.76Cell division control protein 48 OS=Emericella nid... [more]
TERA1_CAEEL1.782e-5961.18Transitional endoplasmic reticulum ATPase homolog ... [more]
TERA2_CAEEL7.410e-5958.82Transitional endoplasmic reticulum ATPase homolog ... [more]
CDC48_ENCCU2.204e-1730.13Cell division control protein 48 OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260002 ID=DY260002; Name=DY260002; organism=Citrus clementina; type=EST; length=1024bp
ATAGATAGAATCCATATATATATATATATATATTTGTGCCATCCATCCAT
CCCCAGCCCCCAAAGTTCTTAGCATTGGATTTGGAACCCCAAATCCAAAC
AGGGACCATTTGCTGAAGAAATTCAAAATCCCAATAAATGGCTGATCCTA
GCTCCTCCGCGCCCCGACCAGCTTCTTCCTCTGACCCGAAAAGTAGTAAG
AAAGATTATTCAACTGCTATTCTGGACCGCAAGAAGTCTCCCAACCGTCT
TGTCGTTGATGAAGCAATCAATGATGATAATTCTGTTATCACCATGCATC
CTAACACTATGGAAAAACTTCAGTTTTTCCGAGGTGACACTGTCTTAGTA
AAGGGGAAGAAGCGAAAAGACACAGTTTGTGTTGTTCTTAGTGATGAACT
ATGTGAAGAGTCGAAAGTCAGAGTGAACAAAGTTGTACGATCTAATCTTA
GAGTTCGTCTTGGAGATGTAGTATCTGTTCATCCCTGCCCCGATGTGAAA
TATGGAAGGCGTGTTCACATCCTTCCCATTGATGATACGATCGAGGGTGT
AACTGGAAACTTATTTGATGCATATTTGAAGCCTTATTTCATGGAATCTT
ACCGGCCAGTTAGGAAAGGCGACCTTTTTCTAGTCCGGGGTGGAATGAGA
AGTGTTGAATTTAAAGTAATTGAGACGGACCCTGGTGAATATTGTGTTGT
TGCCCCGGATACTGAGATCCTCTGTGAGGGCGAACCCGTCCAACCGTGAG
GATGAGGAGAGATTAATTGAAGTAGGCCATGAAGATGGTGGGGGTGGTAA
AAAAGCAATGGCTCCAATCCCTGGGCCTGAAAAACCTCCCCCTAAACCCC
CCCGGCTTTTCCAAACCCATTGGGGGGAAGCCCCCCCAAAAGGAATCCCG
CCTTATGGGCCCCCCCGGGTCCGGAAAAAACCCCGGATTGCCGGGGCCGT
TTCCCAAAGCGAACCGGGGGCCTCTTTTCCTTTTTGAATTAAGGGCCCCG
AAAACACATTGCCCAACTTTCGCC
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