DY260002

Overview
NameDY260002
Unique NameDY260002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1024
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260002 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 7.337e-13
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 3 
Query:  222 LDRKKSPNRLVVDEAI-NDDNSVITMHPNTMEKLQFFRGDTVLVKGKKRKDTVCVVLSDELCEESKVRVNKVVRSNLRVRLGDVVSVHPCPDVKYGRRVHILPIDDTIEGVT-GNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIE 674
            LD  K P   +V+    N DN  I M    M++L    G TVL+KGKK+++ + +   D   ++  V ++  ++ NLR+   D++ +HP  + K  R V + P  DTI  ++   L  A + PY   SY+P+R      +      +EFKV++
Sbjct:  333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLDRSLKKHYVVISFAMKKNLRLMHNDIIKIHPFMNAKRIRNVVLSPFSDTIPNLSREELEKAVIHPYLKNSYKPLRVNSNIYIYYKNNKIEFKVLK 485
The following BLAST results are available for this feature:
BLAST of DY260002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CDAT_PLAF77.337e-1330.72Putative cell division cycle ATPase OS=Plasmodium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260002 ID=DY260002; Name=DY260002; organism=Citrus clementina; type=EST; length=1024bp
ATAGATAGAATCCATATATATATATATATATATTTGTGCCATCCATCCAT
CCCCAGCCCCCAAAGTTCTTAGCATTGGATTTGGAACCCCAAATCCAAAC
AGGGACCATTTGCTGAAGAAATTCAAAATCCCAATAAATGGCTGATCCTA
GCTCCTCCGCGCCCCGACCAGCTTCTTCCTCTGACCCGAAAAGTAGTAAG
AAAGATTATTCAACTGCTATTCTGGACCGCAAGAAGTCTCCCAACCGTCT
TGTCGTTGATGAAGCAATCAATGATGATAATTCTGTTATCACCATGCATC
CTAACACTATGGAAAAACTTCAGTTTTTCCGAGGTGACACTGTCTTAGTA
AAGGGGAAGAAGCGAAAAGACACAGTTTGTGTTGTTCTTAGTGATGAACT
ATGTGAAGAGTCGAAAGTCAGAGTGAACAAAGTTGTACGATCTAATCTTA
GAGTTCGTCTTGGAGATGTAGTATCTGTTCATCCCTGCCCCGATGTGAAA
TATGGAAGGCGTGTTCACATCCTTCCCATTGATGATACGATCGAGGGTGT
AACTGGAAACTTATTTGATGCATATTTGAAGCCTTATTTCATGGAATCTT
ACCGGCCAGTTAGGAAAGGCGACCTTTTTCTAGTCCGGGGTGGAATGAGA
AGTGTTGAATTTAAAGTAATTGAGACGGACCCTGGTGAATATTGTGTTGT
TGCCCCGGATACTGAGATCCTCTGTGAGGGCGAACCCGTCCAACCGTGAG
GATGAGGAGAGATTAATTGAAGTAGGCCATGAAGATGGTGGGGGTGGTAA
AAAAGCAATGGCTCCAATCCCTGGGCCTGAAAAACCTCCCCCTAAACCCC
CCCGGCTTTTCCAAACCCATTGGGGGGAAGCCCCCCCAAAAGGAATCCCG
CCTTATGGGCCCCCCCGGGTCCGGAAAAAACCCCGGATTGCCGGGGCCGT
TTCCCAAAGCGAACCGGGGGCCTCTTTTCCTTTTTGAATTAAGGGCCCCG
AAAACACATTGCCCAACTTTCGCC
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