DY260003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.827e-40 Identity = 81/164 (49.39%), Postives = 113/164 (68.90%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 Q +++G+ L+LK A + A +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV FGPKP+D+++K+N+KE+RL E+ IVVE F + +PKTKE + A+ RWG+D QK +V E+++N++ S++N Sbjct: 10 QGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARN 171
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 2.020e-39 Identity = 84/176 (47.73%), Postives = 117/176 (66.48%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q +++G+ L+L+ A ++A +VHR+L M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KEKRL E+ IV+E+ +F +PKTKE ++A+ RWG+D + K ++ E ENV S +N L+ + A + Sbjct: 10 QGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMT (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain NATL2A) GN=rplD PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 3.810e-38 Identity = 77/176 (43.75%), Postives = 119/176 (67.61%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ GE+ +DLK+A +A ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++++N+KE+RL + ++++F K E PKT E + ++R G+D K ++ + SE +++S KN ++ + A+++ Sbjct: 10 QGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRL--ALRTALMSRIPDAKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNY3 (50S ribosomal protein L4 OS=Synechocystis sp. (strain PCC 6803) GN=rplD PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 8.488e-38 Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q +++G L L+ A + A +VHRAL+ N R+G AS TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RL +N +VVE F +F +PKTKE A+ RWG P+++ ++ E+ ENV S +N L+ + A+ + Sbjct: 10 QGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTAIASRADNMVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENVFLSGRNIPYLKILRADNL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNP6 (50S ribosomal protein L4 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplD PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.109e-37 Identity = 79/176 (44.89%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q + G ++L+ A ++A A+VHRALI + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S+K+N+KE+RL + +VV+EF + RPKT++ EA+ RWG++P K + + +NVE S +N N++ + A + Sbjct: 10 QGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITATNL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNE7 (50S ribosomal protein L4 OS=Synechococcus elongatus (strain PCC 7942) GN=rplD PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.109e-37 Identity = 79/176 (44.89%), Postives = 115/176 (65.34%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q + G ++L+ A ++A A+VHRALI + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S+K+N+KE+RL + +VV+EF + RPKT++ EA+ RWG++P K + + +NVE S +N N++ + A + Sbjct: 10 QGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITATNL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNPX (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH8102) GN=rplD PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.448e-37 Identity = 82/176 (46.59%), Postives = 114/176 (64.77%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q K+ G+ LDLK A TA ++HRA++ + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL E+ VV++F E PKTKE +A+ R G+ K ++ E S+ V +S +N ++ + A ++ Sbjct: 10 QGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRL--ALRTALMARVEDVTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVVRRSVRNLEKVKLIAANQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM5 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplD PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.448e-37 Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 KK+G+ +DLK A ++ ++HRA++ + N+R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL ++ VE+F +PKT E I + R G++ +K ++ SE ++KS N ++ + A+++ Sbjct: 12 KKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRL--ALRTALMSRVDDIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSEVIKKSINNIAKVKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_ACAM1 (50S ribosomal protein L4 OS=Acaryochloris marina (strain MBIC 11017) GN=rplD PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.891e-37 Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q + G+ LDLK A + A +VHRAL M N R+GTAS+ TR EVRGGGRKP+ QK TGRAR GS+R+PL GGGV+FGPKPR +S K+N+KE+RL E+ +VVE+F RPKTK+ +EAM RWG++ K ++ + + + S++N L+ + A + Sbjct: 10 QGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRL--ALRTAFASRAEDLVVVEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHDTIYLSARNVEKLKLILASNL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMP (50S ribosomal protein L4 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplD PE=3 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 2.470e-37 Identity = 78/174 (44.83%), Postives = 114/174 (65.52%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 KK G+ +DLK A ++ ++HRA++ + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL T VE+F ++PKT E I + R G++ +K ++ S+ ++KS N ++ + A+++ Sbjct: 12 KKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRISDFKT--VEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSDVIKKSINNLEKVKLIAADQL 183 The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bpback to top |