DY260003

Overview
NameDY260003
Unique NameDY260003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.827e-40
Identity = 81/164 (49.39%), Postives = 113/164 (68.90%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            Q +++G+  L+LK A  + A  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV FGPKP+D+++K+N+KE+RL            E+ IVVE F  +  +PKTKE + A+ RWG+D  QK   +V E+++N++ S++N
Sbjct:   10 QGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWGIDGNQKVVLIVSEITDNIQLSARN 171          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.020e-39
Identity = 84/176 (47.73%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q +++G+  L+L+ A  ++A  +VHR+L   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KEKRL            E+ IV+E+   +F +PKTKE ++A+ RWG+D + K   ++ E  ENV  S +N   L+ + A  +
Sbjct:   10 QGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMT (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain NATL2A) GN=rplD PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.810e-38
Identity = 77/176 (43.75%), Postives = 119/176 (67.61%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ GE+ +DLK+A   +A  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG++FGPKPR +++++N+KE+RL             +  ++++F  K E PKT E +  ++R G+D   K   ++ + SE +++S KN   ++ + A+++
Sbjct:   10 QGKEAGESSIDLKTAKESSAADLLHRAVLRQQAHSRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIIFGPKPRKYNLEMNRKERRL--ALRTALMSRIPDAKIIKDFGSKLEVPKTSEIVALLKRVGIDSDVKILIILNKPSEIIKRSIKNLEKVKLISADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNY3 (50S ribosomal protein L4 OS=Synechocystis sp. (strain PCC 6803) GN=rplD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 8.488e-38
Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q +++G   L L+ A  + A  +VHRAL+    N R+G AS  TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            +N +VVE F  +F +PKTKE   A+ RWG  P+++   ++ E+ ENV  S +N   L+ + A+ +
Sbjct:   10 QGEEVGNASLTLRVAKEENAAHIVHRALVRQQNNARQGNASAKTRAEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTAIASRADNMVVVEAFGDQFSQPKTKELATALTRWGAKPEKRVLLILDEIPENVFLSGRNIPYLKILRADNL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNP6 (50S ribosomal protein L4 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplD PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.109e-37
Identity = 79/176 (44.89%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q +  G   ++L+ A  ++A A+VHRALI  + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S+K+N+KE+RL             + +VV+EF  +  RPKT++  EA+ RWG++P  K   +  +  +NVE S +N  N++ + A  +
Sbjct:   10 QGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITATNL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNE7 (50S ribosomal protein L4 OS=Synechococcus elongatus (strain PCC 7942) GN=rplD PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.109e-37
Identity = 79/176 (44.89%), Postives = 115/176 (65.34%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q +  G   ++L+ A  ++A A+VHRALI  + N R+GT ++ TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S+K+N+KE+RL             + +VV+EF  +  RPKT++  EA+ RWG++P  K   +  +  +NVE S +N  N++ + A  +
Sbjct:   10 QGQTAGNITVELRVAKEESAAAIVHRALIRQLANARQGTHASKTRSEVRGGGRKPWKQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSVKMNRKERRL--ALRTALISRSADLVVVQEFADQISRPKTRDVAEALTRWGVEPGVKVLLITADRDQNVELSVRNLPNVKLITATNL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_SYNPX (50S ribosomal protein L4 OS=Synechococcus sp. (strain WH8102) GN=rplD PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.448e-37
Identity = 82/176 (46.59%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q K+ G+  LDLK A   TA  ++HRA++    + R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGG+VFGPKPR +++ +N+KE+RL            E+  VV++F    E PKTKE  +A+ R G+    K   ++ E S+ V +S +N   ++ + A ++
Sbjct:   10 QGKEAGKATLDLKVAKETTANDLMHRAVLRQQAHARQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGIVFGPKPRTYNLAMNRKERRL--ALRTALMARVEDVTVVKDFGTSLEAPKTKEITDALGRLGIAADAKVLIVLTEPSDVVRRSVRNLEKVKLIAANQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROM5 (50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplD PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.448e-37
Identity = 77/174 (44.25%), Postives = 115/174 (66.09%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            KK+G+  +DLK A   ++  ++HRA++  + N+R+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL            ++   VE+F     +PKT E I  + R G++  +K   ++   SE ++KS  N   ++ + A+++
Sbjct:   12 KKVGKVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRL--ALRTALMSRVDDIKAVEDFGSTLNQPKTSEIINGLSRLGIEKTEKVLVILDSPSEVIKKSINNIAKVKLIAADQL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_ACAM1 (50S ribosomal protein L4 OS=Acaryochloris marina (strain MBIC 11017) GN=rplD PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.891e-37
Identity = 81/176 (46.02%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            Q +  G+  LDLK A  + A  +VHRAL   M N R+GTAS+ TR EVRGGGRKP+ QK TGRAR GS+R+PL  GGGV+FGPKPR +S K+N+KE+RL            E+ +VVE+F     RPKTK+ +EAM RWG++   K   ++ +  + +  S++N   L+ + A  +
Sbjct:   10 QGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRL--ALRTAFASRAEDLVVVEDFGDNLSRPKTKDLLEAMGRWGVNADSKTLLILADKHDTIYLSARNVEKLKLILASNL 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PROMP (50S ribosomal protein L4 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplD PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.470e-37
Identity = 78/174 (44.83%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            KK G+  +DLK A   ++  ++HRA++  + NKR+GTASTLTR EVRGGGRKPY QK TGRAR+GS RTPLRPGGGV+FGPKPR +++ +N+KE+RL              T  VE+F    ++PKT E I  + R G++  +K   ++   S+ ++KS  N   ++ + A+++
Sbjct:   12 KKAGKVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEVRGGGRKPYKQKGTGRARQGSIRTPLRPGGGVIFGPKPRSYNLDMNRKERRLALRTALMSRISDFKT--VEDFGSTLDQPKTSEIINGLSRLGIEKTEKVLVILDNPSDVIKKSINNLEKVKLIAADQL 183          
The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_CYAP81.827e-4049.3950S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_TRIEI2.020e-3947.7350S ribosomal protein L4 OS=Trichodesmium erythrae... [more]
RL4_PROMT3.810e-3843.7550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_SYNY38.488e-3846.0250S ribosomal protein L4 OS=Synechocystis sp. (str... [more]
RL4_SYNP61.109e-3744.8950S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_SYNE71.109e-3744.8950S ribosomal protein L4 OS=Synechococcus elongatu... [more]
RL4_SYNPX1.448e-3746.5950S ribosomal protein L4 OS=Synechococcus sp. (str... [more]
RL4_PROM51.448e-3744.2550S ribosomal protein L4 OS=Prochlorococcus marinu... [more]
RL4_ACAM11.891e-3746.0250S ribosomal protein L4 OS=Acaryochloris marina (... [more]
RL4_PROMP2.470e-3744.8350S ribosomal protein L4 OS=Prochlorococcus marinu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bp
CTCGTTTTCATCTCTTTCATTTTTCTCCTCCACAATCTTCCTCACTTCAT
CTTCTAACAAAGTTCCAAAGCCCATTCAACTCGCCAAGCCAAATTCCCTA
ATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCAACTCGCCTCTCC
GCTCCCGATACTGTCCTTCACAGGCGAAAAAAATCGGCGAGACATACCTC
GACCTAAAGTCCGCCGCACCCGACACAGCGCGTGCGGTTGTCCACCGGGC
GTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGCGTCGACTCTCA
CGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACTCTCAAAAGAAA
ACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTTCGGCCCGGAGG
AGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGATTAAGATAAACA
AGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGAGCGCCGCGGCG
GCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAGTTTGAGAGGCC
GAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGGTTTGGACCCCA
AGCAGAAAGCGACGTTCCTGGTGATGGAGGTGAGCGAGAATGTGGAAAAA
TCCAGTAAGAATAATGGGAACTTGGAAAATGTGGACGCCGAGGAAATTGA
ATTTGTTTGAAATTTTGGAGGCCGAAACCCCGGGGTTGACCCCGCCACCG
TTGATTTCCTGGATGGGCCGGAATGGGGTCCAGTCCAAGGGAAAAGGCCA
ACAAAAAAAAAAAAAAGTGGACCCAGGGACGCCGGGGAAGAAATTAACGC
ACCAAAAAAAAAATTCAAAAATTTGGGGCACTTTTCCCCCCGAAAGAACA
AAGAGATCATTTAATTGGCACCCCCCTCGAATTACAAGGAATTCTTCATC
CCTCCAAACCGCCCACCCCCCACACCGCGGCTAAGCGCCCCCGCGGGCCC
CCCCCCCC
back to top