DY260003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2) HSP 1 Score: 248.825 bits (634), Expect = 3.656e-65 Identity = 136/244 (55.74%), Postives = 163/244 (66.80%), Query Frame = 3 Query: 36 SSSLHLLTKFQSPFNSPSQIP**ISRQSHSLSHLNSPLRSRYCPSQAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV*NFGGRNPGVDPATVDFLD 764 SSSL L + Q P S R S LS + + +K+GETYLDLK+A DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L E IVVEEF KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KSS+N G L + + + PA V+FL+ Sbjct: 15 SSSLFLSSSHQIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLN 258
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 9.957e-63 Identity = 139/261 (53.26%), Postives = 170/261 (65.13%), Query Frame = 3 Query: 12 LFHFSPPQSSSLHLLTKFQSPFNSPSQIP**ISRQSHSLSHLNSPLRSRYCPS-QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV*NFGGRNPGVDPATVDFL-----DGPEW 776 +F +P SS HLL F SP Q+ +++ + S + + S ++G T L+LKSA DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV SS+N G L+ + + + + VDFL D EW Sbjct: 12 IFLSNPNIQSSKHLL------FRSPKQL------SVAAIATIRSEVATIPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYGDENEW 258
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.467e-61 Identity = 115/187 (61.50%), Postives = 141/187 (75.40%), Query Frame = 3 Query: 117 SHSLSHLNSPLRSRYCPS-----QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 SHS + L+ ++S P +K+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS +PLRPGGGV+FGPKPRDW+IK+NKKE+RL N+ VVEEF FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS +N Sbjct: 38 SHSQTSLSLSIKSELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRN 222 HSP 2 Score: 29.261 bits (64), Expect = 1.467e-61 Identity = 13/23 (56.52%), Postives = 17/23 (73.91%), Query Frame = 1 Query: 658 RIMGTWKMWTPRKLNLFEILEAE 726 R + T K+ TPR LNLF++L AE Sbjct: 221 RNIRTLKLLTPRSLNLFDVLNAE 243
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 4.349e-42 Identity = 87/176 (49.43%), Postives = 119/176 (67.61%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q GE LDL +A P+TA +VHRAL+ + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RL E+ IVV++F RPKTKE + A++RWG++P+QK L +++E V S++N L+ + A+++ Sbjct: 10 QGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 3.682e-41 Identity = 85/176 (48.30%), Postives = 118/176 (67.05%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q ++G+T L+LK A +TA ++HRA++ + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+S K+N+KE+RL EN I+VE F + +PKTKE A+ RWG+ K K ++ E+ EN+ S++N N++ + A+ I Sbjct: 10 QGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLIRADSI 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 6.280e-41 Identity = 85/178 (47.75%), Postives = 122/178 (68.54%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSKNNGNLENVDAEEI 698 Q +++GET +L+ A +TA +VHRAL+ + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ IVVEEF + RPKTK+ + A+ RWG+ P+ KA ++ E+ ++NV S++N NL+ + A ++ Sbjct: 10 QGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQL 185
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 6.280e-41 Identity = 86/176 (48.86%), Postives = 114/176 (64.77%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q ++GET L+L+ A + A +VHRAL M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+SIK+N KE+RL ++ IVVE+F K RPKTKE A+ RWG+ P K +V + + + S++N ++ + A + Sbjct: 10 QGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.071e-40 Identity = 84/176 (47.73%), Postives = 117/176 (66.48%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q ++IG+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S++N NL+ + A+++ Sbjct: 10 QGEQIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.399e-40 Identity = 83/176 (47.16%), Postives = 117/176 (66.48%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q +++G+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S++N NL+ + A+++ Sbjct: 10 QGEQVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQL 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_MICAN (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) GN=rplD PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.827e-40 Identity = 83/176 (47.16%), Postives = 118/176 (67.05%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 Q ++ G L+LK+A P+TA+ ++HR +++ + R+G AS+ TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KEKRL +N IVVE F +F +PKTKE A+ RWG P++K ++ E+ ENV S +N NL+ + A+ + Sbjct: 10 QGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRL--ALRTALISQADNFIVVESFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRADSL 183 The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bpback to top |