DY260003

Overview
NameDY260003
Unique NameDY260003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACCQ (50S ribosomal protein L4 OS=Bacillus cereus (strain Q1) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACC7 (50S ribosomal protein L4 OS=Bacillus cereus (strain AH187) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACC4 (50S ribosomal protein L4 OS=Bacillus cereus (strain B4264) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACC3 (50S ribosomal protein L4 OS=Bacillus cereus (strain 03BB102) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACC2 (50S ribosomal protein L4 OS=Bacillus cereus (strain G9842) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACC1 (50S ribosomal protein L4 OS=Bacillus cereus (strain ATCC 10987) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACC0 (50S ribosomal protein L4 OS=Bacillus cereus (strain AH820) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACAN (50S ribosomal protein L4 OS=Bacillus anthracis GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACAH (50S ribosomal protein L4 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
[Close]
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACAC (50S ribosomal protein L4 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_BACCQ2.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC72.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC42.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC32.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC22.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC12.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACC02.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACAN2.244e-2236.4250S ribosomal protein L4 OS=Bacillus anthracis GN=... [more]
RL4_BACAH2.244e-2236.4250S ribosomal protein L4 OS=Bacillus thuringiensis... [more]
RL4_BACAC2.244e-2236.4250S ribosomal protein L4 OS=Bacillus anthracis (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bp
CTCGTTTTCATCTCTTTCATTTTTCTCCTCCACAATCTTCCTCACTTCAT
CTTCTAACAAAGTTCCAAAGCCCATTCAACTCGCCAAGCCAAATTCCCTA
ATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCAACTCGCCTCTCC
GCTCCCGATACTGTCCTTCACAGGCGAAAAAAATCGGCGAGACATACCTC
GACCTAAAGTCCGCCGCACCCGACACAGCGCGTGCGGTTGTCCACCGGGC
GTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGCGTCGACTCTCA
CGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACTCTCAAAAGAAA
ACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTTCGGCCCGGAGG
AGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGATTAAGATAAACA
AGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGAGCGCCGCGGCG
GCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAGTTTGAGAGGCC
GAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGGTTTGGACCCCA
AGCAGAAAGCGACGTTCCTGGTGATGGAGGTGAGCGAGAATGTGGAAAAA
TCCAGTAAGAATAATGGGAACTTGGAAAATGTGGACGCCGAGGAAATTGA
ATTTGTTTGAAATTTTGGAGGCCGAAACCCCGGGGTTGACCCCGCCACCG
TTGATTTCCTGGATGGGCCGGAATGGGGTCCAGTCCAAGGGAAAAGGCCA
ACAAAAAAAAAAAAAAGTGGACCCAGGGACGCCGGGGAAGAAATTAACGC
ACCAAAAAAAAAATTCAAAAATTTGGGGCACTTTTCCCCCCGAAAGAACA
AAGAGATCATTTAATTGGCACCCCCCTCGAATTACAAGGAATTCTTCATC
CCTCCAAACCGCCCACCCCCCACACCGCGGCTAAGCGCCCCCGCGGGCCC
CCCCCCCC
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