DY260003

Overview
NameDY260003
Unique NameDY260003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_ODOSI (50S ribosomal protein L4, chloroplastic OS=Odontella sinensis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 8.240e-25
Identity = 59/154 (38.31%), Postives = 93/154 (60.39%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++H+ ++    ++R+GT ST TR EVRGGGRKP+ QK TGRAR GS+R+PL  GGGV+FGPKPR   +K+NKKE++L             N  +++  +   + PKTK F    +   ++  QK   +V E +  ++ +++N  N+E + A  +
Sbjct:   37 LIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKL--ALQTLLYNKRNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGEKTIPLKLATRNIKNVELILASNL 188          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_GEOLS (50S ribosomal protein L4 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplD PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.406e-24
Identity = 60/162 (37.04%), Postives = 94/162 (58.02%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            +KIGE  LD +  A +    ++H+AL   + N+R GT  T TR EV GGG+KP+ QK TG AR+G +R P  PGGG VFGP+P+ +++ INKK ++             E   V+++ +  F +  TK+F   M+++ L   +++  +  E S N+  SS+N
Sbjct:   12 EKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGGGKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKSEKITVLDQIE--FAKISTKDFAGFMKKFDL---ERSLIITEEPSTNLALSSRN 168          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.398e-24
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            K G+  L+      +    VV  A++    + R+GT +   R  VRGGGRKP+ QK TGRAR+GS R+P   GGG+VFGP PR ++  I KK +RL            E+ +VV+EF  KFE PKTK+F +++    +D  +KA  ++ E +E+   +++N  N++ V+ E I
Sbjct:   13 KNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVD--KKALLVLEEDNESAVLAARNLSNVKIVEPEGI 181          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THESQ (50S ribosomal protein L4 OS=Thermotoga sp. (strain RQ2) GN=rplD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.131e-24
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM----EVSENVEKSSKNNGNLENVDAE 692
            V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GG+  GPKPRDWS K+NKK K+L                V++  D K ERPKTK   E ++   L    K T +V+    E   NV+ S KN  N++ + A+
Sbjct:   32 VMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQ--NLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVIIAD 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEP1 (50S ribosomal protein L4 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.131e-24
Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM----EVSENVEKSSKNNGNLENVDAE 692
            V+ R +   + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+   GG+  GPKPRDWS K+NKK K+L                V++  D K ERPKTK   E ++   L    K T +V+    E   NV+ S KN  N++ + A+
Sbjct:   32 VMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQ--NLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVIIAD 183          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.090e-24
Identity = 60/164 (36.59%), Postives = 94/164 (57.32%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            + +K+G+  L  K    +  + V+H+ ++  + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P    GGVVF PKPRD+S+ I K  KR+               +++E  +   + PKTKE ++ +  +     +K   +  E ++N+ KS++N
Sbjct:   10 EGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFN---AKKTLIVTEESNKNIYKSARN 168          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_ALKOO (50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.090e-24
Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 3
Query:  240 VHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            ++  +   + N+R+GT S  TR EVRGGGRKP+ QK TGRAR GS R+PL  GGG+VF PKPRD+S  I KK +RL               IV++E   K + PKTKE +  ++   +D  +KA  ++ E SE V KS+ N
Sbjct:   33 MYEVVKNQLANRRQGTQSAKTRAEVRGGGRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNELIVLDEL--KLDAPKTKEMVNILKNLNVD--KKALIVMGEKSEAVIKSANN 169          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_THAPS (50S ribosomal protein L4, chloroplastic OS=Thalassiosira pseudonana GN=rpl4 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.341e-24
Identity = 62/178 (34.83%), Postives = 100/178 (56.18%), Query Frame = 3
Query:  165 PSQAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            P +++KI      L     D+   ++HR ++    ++++GT ST TR EVRGGG+KP+ QK TGRAR GS+R+PL  GGGV+FGPKP+  ++K+NKKE+ L            +  I+ +      +  KTKEF    +  G +  +K   +  E +  ++ S++N  N+E + A  +
Sbjct:   20 PGESRKI-----TLNVLLEDSGNYLIHRDILRHQLSQKQGTVSTKTRSEVRGGGKKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPKTANLKLNKKERNL----ALQTLLYNKRDIITQVSTLDIKNVKTKEFYNFCKEKGFNLNEKLLVIDSEKTTPLKLSTRNLKNVELISASNL 188          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_OCEIH (50S ribosomal protein L4 OS=Oceanobacillus iheyensis GN=rplD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.976e-24
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707
            V+H A++    + R+GT +   R EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR +S K+ KK +RL            E+ +V+E      + PKTKE +  ++  GL    KA  ++ E  E V +S+ N  N+  +  EE+  +
Sbjct:   32 VLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENI--SIDAPKTKEIVNILK--GLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEELNIL 184          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.111e-24
Identity = 64/174 (36.78%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            +++GE  L  +    +    V+H A+   + N+R+GT  T TR EVRGGGRKP+ QK TGRAR GS+R+P+   GG+VFGP PRD++I + KK +RL            +N IV++      + PKTK+ +  +     D   KA  +      NVEKS++N   ++ + A+ +
Sbjct:   12 EQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRILGNLKAD---KALVVTATRDLNVEKSARNIEGVKPLKADGV 180          
The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK4_ODOSI8.240e-2538.3150S ribosomal protein L4, chloroplastic OS=Odontel... [more]
RL4_GEOLS1.406e-2437.0450S ribosomal protein L4 OS=Geobacter lovleyi (str... [more]
RL4_PEDPA2.398e-2438.1550S ribosomal protein L4 OS=Pediococcus pentosaceu... [more]
RL4_THESQ3.131e-2444.2350S ribosomal protein L4 OS=Thermotoga sp. (strain... [more]
RL4_THEP13.131e-2444.2350S ribosomal protein L4 OS=Thermotoga petrophila ... [more]
RL4_CLOTE4.090e-2436.5950S ribosomal protein L4 OS=Clostridium tetani GN=... [more]
RL4_ALKOO4.090e-2444.6850S ribosomal protein L4 OS=Alkaliphilus oremlandi... [more]
RK4_THAPS5.341e-2434.8350S ribosomal protein L4, chloroplastic OS=Thalass... [more]
RL4_OCEIH6.976e-2439.4950S ribosomal protein L4 OS=Oceanobacillus iheyens... [more]
RL4_DESRM9.111e-2436.7850S ribosomal protein L4 OS=Desulfotomaculum reduc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bp
CTCGTTTTCATCTCTTTCATTTTTCTCCTCCACAATCTTCCTCACTTCAT
CTTCTAACAAAGTTCCAAAGCCCATTCAACTCGCCAAGCCAAATTCCCTA
ATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCAACTCGCCTCTCC
GCTCCCGATACTGTCCTTCACAGGCGAAAAAAATCGGCGAGACATACCTC
GACCTAAAGTCCGCCGCACCCGACACAGCGCGTGCGGTTGTCCACCGGGC
GTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGCGTCGACTCTCA
CGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACTCTCAAAAGAAA
ACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTTCGGCCCGGAGG
AGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGATTAAGATAAACA
AGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGAGCGCCGCGGCG
GCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAGTTTGAGAGGCC
GAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGGTTTGGACCCCA
AGCAGAAAGCGACGTTCCTGGTGATGGAGGTGAGCGAGAATGTGGAAAAA
TCCAGTAAGAATAATGGGAACTTGGAAAATGTGGACGCCGAGGAAATTGA
ATTTGTTTGAAATTTTGGAGGCCGAAACCCCGGGGTTGACCCCGCCACCG
TTGATTTCCTGGATGGGCCGGAATGGGGTCCAGTCCAAGGGAAAAGGCCA
ACAAAAAAAAAAAAAAGTGGACCCAGGGACGCCGGGGAAGAAATTAACGC
ACCAAAAAAAAAATTCAAAAATTTGGGGCACTTTTCCCCCCGAAAGAACA
AAGAGATCATTTAATTGGCACCCCCCTCGAATTACAAGGAATTCTTCATC
CCTCCAAACCGCCCACCCCCCACACCGCGGCTAAGCGCCCCCGCGGGCCC
CCCCCCCC
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