DY260003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_ODOSI (50S ribosomal protein L4, chloroplastic OS=Odontella sinensis GN=rpl4 PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 8.240e-25 Identity = 59/154 (38.31%), Postives = 93/154 (60.39%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 ++H+ ++ ++R+GT ST TR EVRGGGRKP+ QK TGRAR GS+R+PL GGGV+FGPKPR +K+NKKE++L N +++ + + PKTK F + ++ QK +V E + ++ +++N N+E + A + Sbjct: 37 LIHKDILRHQSSQRQGTISTKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPRKIILKLNKKERKL--ALQTLLYNKRNNISIIDNLETNLDLPKTKTFYSLCKNCEINLDQKILIIVGEKTIPLKLATRNIKNVELILASNL 188
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_GEOLS (50S ribosomal protein L4 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplD PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.406e-24 Identity = 60/162 (37.04%), Postives = 94/162 (58.02%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 +KIGE LD + A + ++H+AL + N+R GT T TR EV GGG+KP+ QK TG AR+G +R P PGGG VFGP+P+ +++ INKK ++ E V+++ + F + TK+F M+++ L +++ + E S N+ SS+N Sbjct: 12 EKIGEVALDEQIFAAEVKEPLIHQALKVQLANRRAGTVKTKTRAEVSGGGKKPFKQKGTGNARQGCSRAPQYPGGGTVFGPQPKTYNLGINKKARKAALRSLLSMQLKSEKITVLDQIE--FAKISTKDFAGFMKKFDL---ERSLIITEEPSTNLALSSRN 168
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_PEDPA (50S ribosomal protein L4 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplD PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.398e-24 Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 3 Query: 180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 K G+ L+ + VV A++ + R+GT + R VRGGGRKP+ QK TGRAR+GS R+P GGG+VFGP PR ++ I KK +RL E+ +VV+EF KFE PKTK+F +++ +D +KA ++ E +E+ +++N N++ V+ E I Sbjct: 13 KNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLVVVDEF--KFETPKTKDFAQSLGNLNVD--KKALLVLEEDNESAVLAARNLSNVKIVEPEGI 181
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THESQ (50S ribosomal protein L4 OS=Thermotoga sp. (strain RQ2) GN=rplD PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.131e-24 Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM----EVSENVEKSSKNNGNLENVDAE 692 V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GG+ GPKPRDWS K+NKK K+L V++ D K ERPKTK E ++ L K T +V+ E NV+ S KN N++ + A+ Sbjct: 32 VMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQ--NLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVIIAD 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_THEP1 (50S ribosomal protein L4 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplD PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 3.131e-24 Identity = 69/156 (44.23%), Postives = 90/156 (57.69%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVM----EVSENVEKSSKNNGNLENVDAE 692 V+ R + + N+R GTAST TRGEV GGGRKP+ QK TGRAR GS R+P+ GG+ GPKPRDWS K+NKK K+L V++ D K ERPKTK E ++ L K T +V+ E NV+ S KN N++ + A+ Sbjct: 32 VMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGIAHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLFVLD--DLKLERPKTKFLKEILQ--NLQLSDKKTLIVLPWKDEGYMNVKLSGKNLPNVKVIIAD 183
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOTE (50S ribosomal protein L4 OS=Clostridium tetani GN=rplD PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.090e-24 Identity = 60/164 (36.59%), Postives = 94/164 (57.32%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 + +K+G+ L K + + V+H+ ++ + NKR+GT S+ TR EV GGGRKP+ QK TGRAR+GS R P GGVVF PKPRD+S+ I K KR+ +++E + + PKTKE ++ + + +K + E ++N+ KS++N Sbjct: 10 EGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGGGRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQENEIVILESLEA--DAPKTKEIVKMLAAFN---AKKTLIVTEESNKNIYKSARN 168
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_ALKOO (50S ribosomal protein L4 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplD PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 4.090e-24 Identity = 63/141 (44.68%), Postives = 85/141 (60.28%), Query Frame = 3 Query: 240 VHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 ++ + + N+R+GT S TR EVRGGGRKP+ QK TGRAR GS R+PL GGG+VF PKPRD+S I KK +RL IV++E K + PKTKE + ++ +D +KA ++ E SE V KS+ N Sbjct: 33 MYEVVKNQLANRRQGTQSAKTRAEVRGGGRKPWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNELIVLDEL--KLDAPKTKEMVNILKNLNVD--KKALIVMGEKSEAVIKSANN 169
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RK4_THAPS (50S ribosomal protein L4, chloroplastic OS=Thalassiosira pseudonana GN=rpl4 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 5.341e-24 Identity = 62/178 (34.83%), Postives = 100/178 (56.18%), Query Frame = 3 Query: 165 PSQAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 P +++KI L D+ ++HR ++ ++++GT ST TR EVRGGG+KP+ QK TGRAR GS+R+PL GGGV+FGPKP+ ++K+NKKE+ L + I+ + + KTKEF + G + +K + E + ++ S++N N+E + A + Sbjct: 20 PGESRKI-----TLNVLLEDSGNYLIHRDILRHQLSQKQGTVSTKTRSEVRGGGKKPWRQKGTGRARAGSSRSPLWKGGGVIFGPKPKTANLKLNKKERNL----ALQTLLYNKRDIITQVSTLDIKNVKTKEFYNFCKEKGFNLNEKLLVIDSEKTTPLKLSTRNLKNVELISASNL 188
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_OCEIH (50S ribosomal protein L4 OS=Oceanobacillus iheyensis GN=rplD PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 6.976e-24 Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEIEFV 707 V+H A++ + R+GT + R EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR +S K+ KK +RL E+ +V+E + PKTKE + ++ GL KA ++ E E V +S+ N N+ + EE+ + Sbjct: 32 VLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRARQGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENI--SIDAPKTKEIVNILK--GLQVDAKALIVLSEKDETVIRSANNLQNVTVLTVEELNIL 184
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_DESRM (50S ribosomal protein L4 OS=Desulfotomaculum reducens (strain MI-1) GN=rplD PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 9.111e-24 Identity = 64/174 (36.78%), Postives = 98/174 (56.32%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 +++GE L + + V+H A+ + N+R+GT T TR EVRGGGRKP+ QK TGRAR GS+R+P+ GG+VFGP PRD++I + KK +RL +N IV++ + PKTK+ + + D KA + NVEKS++N ++ + A+ + Sbjct: 12 EQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRKPWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNIIVLDSL--TMDAPKTKDMVRILGNLKAD---KALVVTATRDLNVEKSARNIEGVKPLKADGV 180 The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bpback to top |