DY260003

Overview
NameDY260003
Unique NameDY260003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1008
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.007e-22
Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 3
Query:  237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++H  + + +  KR+GT +T TRG  RGGG KP+ QK TGRAR GS R+PL  GGG  FGP+PRD+S K+NKK +RL            E  +VV+  D      KTK F+E     GL   +KA  +V +    +  S++N   ++ + A+++
Sbjct:   32 ILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKMMVVKNID--LPEIKTKLFVEVAEALGL---EKALVVVKDADNKLLLSARNIPGIKLITADQL 180          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOPS (50S ribosomal protein L4 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.316e-22
Identity = 60/164 (36.59%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            + +++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E+ +  FE PKTKE ++ +  +     +K   +  EV+ENV KS++N
Sbjct:   10 EGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLEDLN--FEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARN 166          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOB8 (50S ribosomal protein L4 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.718e-22
Identity = 62/176 (35.23%), Postives = 94/176 (53.41%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            +  K+ +  L+    A +     +H+ ++  + NKR+GT ST TR EVRGGG KP+ QK TGRAR+GS R+P    GG+VF PKPRD+ + + K  +++               IV++  +  FE PKTK  IE ++        KA  +  E +E V KS++N   +  + A  I
Sbjct:   10 EGNKVADMELNENVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGGGIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQDNQMIVLDSLN--FEAPKTKSMIEMLKAL---EANKALIITAESNEVVYKSARNIQGISVIPANNI 180          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.718e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_DESPS (50S ribosomal protein L4 OS=Desulfotalea psychrophila GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 65/162 (40.12%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            +K+ E  L+      +    ++H  +      KR GTAST TR EVRGGG KP+ QK TGRAR GS  +PL  GGGV FGPKPRD+S K+N+K ++              N IV++ F    +  KTKEF   M+   L     A  ++ + SEN+ KS +N
Sbjct:   16 EKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNLIVLDNF--IMDAIKTKEFASTMKTLEL---ANALIVMDDASENLSKSCRN 172          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOPE (50S ribosomal protein L4 OS=Clostridium perfringens GN=rplD PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            + +++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E  D  FE PKTKE ++ +  +     +K   +  EV+ENV KS++N
Sbjct:   10 EGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARN 166          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOP1 (50S ribosomal protein L4 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 3
Query:  171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662
            + +++G+  L+ +    +  +  +H+ ++  + NKR+GT S  TR EVRGGG KP+ QK TGRAR+GS R P    GGVVF PKPRD+ + I K  +++             + +V+E  D  FE PKTKE ++ +  +     +K   +  EV+ENV KS++N
Sbjct:   10 EGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARN 166          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACHK (50S ribosomal protein L4 OS=Bacillus thuringiensis subsp. konkukian GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACCZ (50S ribosomal protein L4 OS=Bacillus cereus (strain ZK / E33L) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181          
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACCR (50S ribosomal protein L4 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22
Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3
Query:  180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698
            ++GE  L       +   AV+  A++    + R+GT    TR EVRGGGRKP+ QK TGRAR+GS R+P   GGG VFGP PR ++ K+ KK +RL             N +V+E  D     PKTK+ +  ++  GL  ++KA  +  + +E+VE S++N   +  + A+ +
Sbjct:   13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181          
The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL4_DESAD1.007e-2238.9650S ribosomal protein L4 OS=Desulfovibrio salexige... [more]
RL4_CLOPS1.316e-2236.5950S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_CLOB81.718e-2235.2350S ribosomal protein L4 OS=Clostridium beijerinck... [more]
RL4_BACWK1.718e-2236.4250S ribosomal protein L4 OS=Bacillus weihenstephan... [more]
RL4_DESPS2.244e-2240.1250S ribosomal protein L4 OS=Desulfotalea psychroph... [more]
RL4_CLOPE2.244e-2237.2050S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_CLOP12.244e-2237.2050S ribosomal protein L4 OS=Clostridium perfringen... [more]
RL4_BACHK2.244e-2236.4250S ribosomal protein L4 OS=Bacillus thuringiensis... [more]
RL4_BACCZ2.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]
RL4_BACCR2.244e-2236.4250S ribosomal protein L4 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YO15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bp
CTCGTTTTCATCTCTTTCATTTTTCTCCTCCACAATCTTCCTCACTTCAT
CTTCTAACAAAGTTCCAAAGCCCATTCAACTCGCCAAGCCAAATTCCCTA
ATAAATCTCCCGCCAAAGCCACTCATTGTCTCATCTCAACTCGCCTCTCC
GCTCCCGATACTGTCCTTCACAGGCGAAAAAAATCGGCGAGACATACCTC
GACCTAAAGTCCGCCGCACCCGACACAGCGCGTGCGGTTGTCCACCGGGC
GTTGATCACCGACATGCAGAACAAGCGACGCGGCACCGCGTCGACTCTCA
CGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCCTACTCTCAAAAGAAA
ACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCCACTTCGGCCCGGAGG
AGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGTCGATTAAGATAAACA
AGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATAGCGAGCGCCGCGGCG
GCGGAGAACACGATTGTGGTGGAGGAATTTGATGGGAAGTTTGAGAGGCC
GAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGTGGGGTTTGGACCCCA
AGCAGAAAGCGACGTTCCTGGTGATGGAGGTGAGCGAGAATGTGGAAAAA
TCCAGTAAGAATAATGGGAACTTGGAAAATGTGGACGCCGAGGAAATTGA
ATTTGTTTGAAATTTTGGAGGCCGAAACCCCGGGGTTGACCCCGCCACCG
TTGATTTCCTGGATGGGCCGGAATGGGGTCCAGTCCAAGGGAAAAGGCCA
ACAAAAAAAAAAAAAAGTGGACCCAGGGACGCCGGGGAAGAAATTAACGC
ACCAAAAAAAAAATTCAAAAATTTGGGGCACTTTTCCCCCCGAAAGAACA
AAGAGATCATTTAATTGGCACCCCCCTCGAATTACAAGGAATTCTTCATC
CCTCCAAACCGCCCACCCCCCACACCGCGGCTAAGCGCCCCCGCGGGCCC
CCCCCCCC
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