DY260003
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_DESAD (50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.007e-22 Identity = 60/154 (38.96%), Postives = 88/154 (57.14%), Query Frame = 3 Query: 237 VVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 ++H + + + KR+GT +T TRG RGGG KP+ QK TGRAR GS R+PL GGG FGP+PRD+S K+NKK +RL E +VV+ D KTK F+E GL +KA +V + + S++N ++ + A+++ Sbjct: 32 ILHLVVRSQLAAKRQGTHATKTRGMKRGGGAKPWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKMMVVKNID--LPEIKTKLFVEVAEALGL---EKALVVVKDADNKLLLSARNIPGIKLITADQL 180
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOPS (50S ribosomal protein L4 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplD PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.316e-22 Identity = 60/164 (36.59%), Postives = 96/164 (58.54%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 + +++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E+ + FE PKTKE ++ + + +K + EV+ENV KS++N Sbjct: 10 EGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLEDLN--FEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARN 166
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOB8 (50S ribosomal protein L4 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplD PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.718e-22 Identity = 62/176 (35.23%), Postives = 94/176 (53.41%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 + K+ + L+ A + +H+ ++ + NKR+GT ST TR EVRGGG KP+ QK TGRAR+GS R+P GG+VF PKPRD+ + + K +++ IV++ + FE PKTK IE ++ KA + E +E V KS++N + + A I Sbjct: 10 EGNKVADMELNENVFAAEINEYALHQVVVALLANKRQGTQSTKTRSEVRGGGIKPWRQKGTGRARQGSIRSPQWIKGGIVFAPKPRDYRVSVPKSMRKVAMKSALTSKVQDNQMIVLDSLN--FEAPKTKSMIEMLKAL---EANKALIITAESNEVVYKSARNIQGISVIPANNI 180
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACWK (50S ribosomal protein L4 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplD PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.718e-22 Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 Query: 180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL N +V+E D PKTK+ + ++ GL ++KA + + +E+VE S++N + + A+ + Sbjct: 13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMVAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_DESPS (50S ribosomal protein L4 OS=Desulfotalea psychrophila GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22 Identity = 65/162 (40.12%), Postives = 88/162 (54.32%), Query Frame = 3 Query: 177 KKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 +K+ E L+ + ++H + KR GTAST TR EVRGGG KP+ QK TGRAR GS +PL GGGV FGPKPRD+S K+N+K ++ N IV++ F + KTKEF M+ L A ++ + SEN+ KS +N Sbjct: 16 EKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAKPWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNLIVLDNF--IMDAIKTKEFASTMKTLEL---ANALIVMDDASENLSKSCRN 172
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOPE (50S ribosomal protein L4 OS=Clostridium perfringens GN=rplD PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22 Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 + +++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E D FE PKTKE ++ + + +K + EV+ENV KS++N Sbjct: 10 EGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARN 166
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_CLOP1 (50S ribosomal protein L4 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22 Identity = 61/164 (37.20%), Postives = 95/164 (57.93%), Query Frame = 3 Query: 171 QAKKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKN 662 + +++G+ L+ + + + +H+ ++ + NKR+GT S TR EVRGGG KP+ QK TGRAR+GS R P GGVVF PKPRD+ + I K +++ + +V+E D FE PKTKE ++ + + +K + EV+ENV KS++N Sbjct: 10 EGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGGGIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKV--AMTSALTSKVADMVVLE--DLTFEAPKTKEAVKMLNAF---EAKKTLIITAEVNENVYKSARN 166
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACHK (50S ribosomal protein L4 OS=Bacillus thuringiensis subsp. konkukian GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22 Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 Query: 180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL N +V+E D PKTK+ + ++ GL ++KA + + +E+VE S++N + + A+ + Sbjct: 13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACCZ (50S ribosomal protein L4 OS=Bacillus cereus (strain ZK / E33L) GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22 Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 Query: 180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL N +V+E D PKTK+ + ++ GL ++KA + + +E+VE S++N + + A+ + Sbjct: 13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181
BLAST of DY260003 vs. ExPASy Swiss-Prot
Match: RL4_BACCR (50S ribosomal protein L4 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplD PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 2.244e-22 Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 3 Query: 180 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSKNNGNLENVDAEEI 698 ++GE L + AV+ A++ + R+GT TR EVRGGGRKP+ QK TGRAR+GS R+P GGG VFGP PR ++ K+ KK +RL N +V+E D PKTK+ + ++ GL ++KA + + +E+VE S++N + + A+ + Sbjct: 13 QVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNIVVLE--DLVLNAPKTKDMLAVLK--GLTVEKKALIVTADANESVELSARNIPGVTVITADGV 181 The following BLAST results are available for this feature:
BLAST of DY260003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260003 ID=DY260003; Name=DY260003; organism=Citrus clementina; type=EST; length=1008bpback to top |