DY260188

Overview
NameDY260188
Unique NameDY260188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 9.559e-37
Identity = 82/173 (47.40%), Postives = 108/173 (62.43%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.248e-36
Identity = 83/173 (47.98%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.744e-36
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.744e-36
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 4.744e-36
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.744e-36
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 4.744e-36
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.196e-36
Identity = 81/173 (46.82%), Postives = 106/173 (61.27%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL +Y +  +  ADNVGS Q+Q IR  LRG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LIR GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 1.380e-35
Identity = 76/172 (44.19%), Postives = 108/172 (62.79%), Query Frame = 1
Query:  172 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            +V+  ++  K  Y  KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP++TG+ P +T F Q L IPTKI +GT+EI     LI++GDK G+S
Sbjct:    1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGAS 170          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.803e-35
Identity = 80/173 (46.24%), Postives = 107/173 (61.85%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL+++ +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEAT 173          
The following BLAST results are available for this feature:
BLAST of DY260188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RLA0_RANSY9.559e-3747.4060S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_CHICK1.248e-3647.9860S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_RAT4.744e-3646.8260S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG4.744e-3646.8260S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_MOUSE4.744e-3646.8260S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_HUMAN4.744e-3646.8260S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN4.744e-3646.8260S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_ICTPU6.196e-3646.8260S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CAEEL1.380e-3544.1960S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_DANRE1.803e-3546.2460S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260188 ID=DY260188; Name=DY260188; organism=Citrus clementina; type=EST; length=1023bp
GGGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTT
AAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGT
CTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAG
TAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAA
GATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAA
TATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATT
CGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTAT
GATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCT
TTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACA
AAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGG
AGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTC
CCCGGCACACAGGTCTCGACCCCTCCCAGACCCCCTTCCTCCAGGTGCTT
AACATTCCCACCAAGATTAACCAGGGTACCGTTGAAATTACCACACCCGC
GGACCTTATTAGGAAGGGTGACAAGGCGGGATCTTCCTAAGGCACCCCCG
CTTGCAAAGCTTGGGACTCGCACCCTCCCCCAAGGGCCCGGTTGTCCACC
TCGCCCAGAAAAACGGCTCCCCCCCCCCACCCAACAGCCCTCGAACCTGC
CCAACAAGCACAATTACAACAAACTGCCCCCCCGCTTCACCCTGTCTACC
GCCCTACGACACTGCCCCCCCCCCACCCCACCCCGGCCTCCCCCCCCACA
CCGCTCCCCTCATTCCCCCCCCCACACGCGCTGCGCCTGGCCACGACCCC
CGCAGTCTCCACTCTCCTCACAATCGCTATAATTACAGAATAGACCCCCT
CCTCTCATCCTCCCCTTCTCCCA
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