DY260188

Overview
NameDY260188
Unique NameDY260188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.354e-35
Identity = 81/173 (46.82%), Postives = 105/173 (60.69%), Query Frame = 1
Query:  178 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP ++TGL P +T F Q L I TKI++GT+EI +   LI+ GDK G+S  T
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.993e-34
Identity = 75/170 (44.12%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  187 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+  IR+ LRG++VVLMGKNTM++R ++     T    +  L+P ++GNVG +FT GDL             APAR G +AP DV +P  +TG++P +T F Q L +PTKI +GT+EITT   L+  G K G S  T
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE--YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEAT 171          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.892e-34
Identity = 75/170 (44.12%), Postives = 100/170 (58.82%), Query Frame = 1
Query:  187 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P  +TG++P +T F Q L +PTKI +GT+EITT   L+  G K G S  T
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEAT 171          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.746e-30
Identity = 70/176 (39.77%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  172 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGS+Q+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PP  TG+DPS T FL+ L I TKI +G +EI     LI++G+K  +S  T
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSAT 174          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.635e-30
Identity = 71/165 (43.03%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  193 EKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V   +TG++P +T F Q L +PTKI +GT+EI +   ++  G+K G S
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQS 168          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.132e-29
Identity = 70/172 (40.70%), Postives = 96/172 (55.81%), Query Frame = 1
Query:  181 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP  +TG++P +T F Q L IPTKI +GT+EIT+   L+ K  K G S  T
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEAT 171          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.530e-26
Identity = 68/169 (40.24%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  190 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            A K+  Y  +L QL+ E+ ++LV +AD+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P   TG+DP  T F Q L I TKI +G +EI     LIR+G++  +S  T
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAAT 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.609e-26
Identity = 67/169 (39.64%), Postives = 98/169 (57.99%), Query Frame = 1
Query:  190 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +++K  +  K  +L   Y +++VA AD VGS QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P   TG++P+QT FLQ L I TKIN+G ++I     +I+ G K G+S  T
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY--LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEAT 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.885e-25
Identity = 67/178 (37.64%), Postives = 97/178 (54.49%), Query Frame = 1
Query:  184 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP  +TG++P  T F Q LNI TKI +GTVEI +   ++  GD+  +S  T
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTAT 180          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.340e-22
Identity = 65/173 (37.57%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  199 KIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++RRG RG +  +MGK T+  + +   A+    +              LL GN GLIFT   +             APARVG + P DVVVP   TG++P+QT F Q LNI TKI +G VEI T   ++  GDK  +S  T
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTAT 179          
The following BLAST results are available for this feature:
BLAST of DY260188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RLA0L_HUMAN2.354e-3546.8260S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_NEUCR1.993e-3444.1260S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN9.892e-3444.1260S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_PLAF81.746e-3039.7760S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_YEAST6.635e-3043.0360S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_SCHPO1.132e-2940.7060S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_EIMTE1.530e-2640.2460S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_DICDI2.609e-2639.6460S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_TRYCR2.885e-2537.6460S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEICH1.340e-2237.5760S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260188 ID=DY260188; Name=DY260188; organism=Citrus clementina; type=EST; length=1023bp
GGGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTT
AAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGT
CTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAG
TAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAA
GATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAA
TATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATT
CGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTAT
GATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCT
TTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACA
AAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGG
AGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTC
CCCGGCACACAGGTCTCGACCCCTCCCAGACCCCCTTCCTCCAGGTGCTT
AACATTCCCACCAAGATTAACCAGGGTACCGTTGAAATTACCACACCCGC
GGACCTTATTAGGAAGGGTGACAAGGCGGGATCTTCCTAAGGCACCCCCG
CTTGCAAAGCTTGGGACTCGCACCCTCCCCCAAGGGCCCGGTTGTCCACC
TCGCCCAGAAAAACGGCTCCCCCCCCCCACCCAACAGCCCTCGAACCTGC
CCAACAAGCACAATTACAACAAACTGCCCCCCCGCTTCACCCTGTCTACC
GCCCTACGACACTGCCCCCCCCCCACCCCACCCCGGCCTCCCCCCCCACA
CCGCTCCCCTCATTCCCCCCCCCACACGCGCTGCGCCTGGCCACGACCCC
CGCAGTCTCCACTCTCCTCACAATCGCTATAATTACAGAATAGACCCCCT
CCTCTCATCCTCCCCTTCTCCCA
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