DY260188

Overview
NameDY260188
Unique NameDY260188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.130e-20
Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  199 KIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++ R LR  +  +MGK T+  + +   A+    +              LL GN GLIFT   +               ARVG ++P DV+V    TG++P+QT F Q LNI TKI +G VEI T   ++  GDK  +S  T
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQGKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTAT 180          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.461e-18
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M  K +K  K++ Y+ +  +L E Y++  +   +NV S QL++I+R   G++ +LMGKN+ ++R I       G      +  L++G+V  +F KG+              A A+VG VA  DV V    TG+ P +T + Q L I TKI +G VEI +P  ++ +GDK G S
Sbjct:   25 MTRKDAKERKELTYE-RARKLFETYSRFALVKIENVVSTQLKDIKRQWGGNAELLMGKNSAIRRAIA----DLGKPELSGVYDLVKGDVCFVFFKGNARDIKKAIDENVREACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPS 192          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.308e-13
Identity = 49/156 (31.41%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  214 AKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGD 672
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP   TG+DP   PF   LQ +    +I +G++++   + +  +G+
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPG--PFVGELQTIGANARIQEGSIQVLDDSVVTEEGE 169          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.308e-13
Identity = 49/156 (31.41%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  214 AKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGD 672
            A+L  LLE Y  + V     + S QLQ++RRGL G + + M +NT++ R +    E+ G+     L   ++G VGL+ T  +              AP   G VAP D+VVP   TG+DP   PF   LQ +    +I +G++++   + +  +G+
Sbjct:   21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD-GLDTLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAGEVAPNDIVVPEGDTGIDPG--PFVGELQTIGANARIQEGSIQVLDDSVVTEEGE 169          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.658e-12
Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  181 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQ-TPFLQVLNIPTKINQGTVEITTPADLIRKGD 672
            A  AE K     +L +LL++Y  I +    +V ++ L  +R  LR  +V+ + +NT+++  ++  A++  ++    LI  +QG  G++ TK +              APA+ G  AP DVVVP   T L P      +Q L IP +I +G V I     +++ G+
Sbjct:    2 AHVAEWKKKEVEELTKLLQDYPVIALVDVADVPAYPLSKMRESLRDKAVLRVSRNTLIELALKKAAQELNDSNLEKLIEHIQGGTGILVTKINPFKLYKFLEESKKPAPAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGE 166          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.239e-12
Identity = 46/159 (28.93%), Postives = 77/159 (48.43%), Query Frame = 1
Query:  217 KLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGDKAGS 684
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P   TG+DP   PF   LQ +    +I  G++++   + ++  G++  S
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPG--PFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSS 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.064e-11
Identity = 45/165 (27.27%), Postives = 80/165 (48.48%), Query Frame = 1
Query:  181 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQ-TPFLQVLNIPTKINQGTVEITTPADLIRKGD 672
            A  AE K     +L  +++ Y  I +    NV ++ L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG  G++ T+ +              APA+ G+  P DVV+P   T + P      +Q L IP +I +G V I     +++ G+
Sbjct:    2 AHVAEWKKKEVEELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGE 166          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.390e-11
Identity = 48/154 (31.17%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  220 LCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGD 672
            L +LL+    I +     V S QLQ IR  +R    + M +NT+MKR I   AE+TGN +F  LI  ++    LI T+ +              AP + G  AP D+ +    TG+ P   PF   L+ + +P  I +G + I     + ++GD
Sbjct:   21 LKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRNTLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGATAPCDIEIKAGSTGMPPG--PFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGD 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.815e-11
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 1
Query:  217 KLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGDK 675
            +L   +E Y  + V     + S QLQ++RR L G + V M +NT++ R +        N  F  L   + G V LI T  +              AP   G VAP D+V+P   TG+DP   PF   LQ +    +I  G++ +T  ++++ +G++
Sbjct:   22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPG--PFVGELQQVGASARIMDGSIMVTEDSNVLSEGEE 170          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.898e-11
Identity = 45/165 (27.27%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  181 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQ-TPFLQVLNIPTKINQGTVEITTPADLIRKGD 672
            A  AE K     +L  +++ Y  I +     V ++ L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG   ++ T+ +              APA+ G V P DVV+P   T L P      +Q L IP +I +G V I     +++ G+
Sbjct:    2 AHVAEWKKKEVEELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGE 166          
The following BLAST results are available for this feature:
BLAST of DY260188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RLA0_LEIIN8.130e-2034.1060S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU4.461e-1834.1060S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_HALSA3.308e-1331.41Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS33.308e-1331.41Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_THESM3.658e-1229.09Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_NATPD6.239e-1228.93Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_THEON1.064e-1127.27Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METVO1.390e-1131.17Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_HALVO1.815e-1129.49Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_PYRKO6.898e-1127.27Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260188 ID=DY260188; Name=DY260188; organism=Citrus clementina; type=EST; length=1023bp
GGGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTT
AAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGT
CTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAG
TAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAA
GATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAA
TATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATT
CGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTAT
GATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCT
TTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACA
AAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGG
AGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTC
CCCGGCACACAGGTCTCGACCCCTCCCAGACCCCCTTCCTCCAGGTGCTT
AACATTCCCACCAAGATTAACCAGGGTACCGTTGAAATTACCACACCCGC
GGACCTTATTAGGAAGGGTGACAAGGCGGGATCTTCCTAAGGCACCCCCG
CTTGCAAAGCTTGGGACTCGCACCCTCCCCCAAGGGCCCGGTTGTCCACC
TCGCCCAGAAAAACGGCTCCCCCCCCCCACCCAACAGCCCTCGAACCTGC
CCAACAAGCACAATTACAACAAACTGCCCCCCCGCTTCACCCTGTCTACC
GCCCTACGACACTGCCCCCCCCCCACCCCACCCCGGCCTCCCCCCCCACA
CCGCTCCCCTCATTCCCCCCCCCACACGCGCTGCGCCTGGCCACGACCCC
CGCAGTCTCCACTCTCCTCACAATCGCTATAATTACAGAATAGACCCCCT
CCTCTCATCCTCCCCTTCTCCCA
back to top