DY260188

Overview
NameDY260188
Unique NameDY260188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.898e-11
Identity = 46/154 (29.87%), Postives = 74/154 (48.05%), Query Frame = 1
Query:  220 LCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGD 672
            L +LL+    I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G +AP D+ V    TG+ P   PF   L+ + IP  I++G + I     ++++G+
Sbjct:   21 LKELLKSSNIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAIAPCDIEVKAGSTGMPPG--PFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGE 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.898e-11
Identity = 45/154 (29.22%), Postives = 75/154 (48.70%), Query Frame = 1
Query:  220 LCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPF---LQVLNIPTKINQGTVEITTPADLIRKGD 672
            L +LL+  + I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G VAP D+ +    TG+ P   PF   L+ + +P  I++G + I     ++++G+
Sbjct:   21 LKELLKSSSIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAVAPCDIEIKAGSTGMPPG--PFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGE 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.898e-11
Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  190 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQ-TPFLQVLNIPTKINQGTVEITTPADLIRKGDK 675
            AE K     +L +L++EY  + +   + + + QLQ IR  LR  D+++ M +NT+M+  +    EK      L  L+  ++G V  IFT  D              APA+ G +AP D+VVP   T  +P      LQ   +P +I  G V IT    L+++G++
Sbjct:   18 AEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEE 179          
The following BLAST results are available for this feature:
BLAST of DY260188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RLA0_METMP6.898e-1129.87Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METM56.898e-1129.22Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METKA6.898e-1130.91Acidic ribosomal protein P0 homolog OS=Methanopyru... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260188 ID=DY260188; Name=DY260188; organism=Citrus clementina; type=EST; length=1023bp
GGGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTT
AAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGT
CTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAG
TAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAA
GATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAA
TATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATT
CGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTAT
GATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCT
TTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACA
AAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGG
AGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTC
CCCGGCACACAGGTCTCGACCCCTCCCAGACCCCCTTCCTCCAGGTGCTT
AACATTCCCACCAAGATTAACCAGGGTACCGTTGAAATTACCACACCCGC
GGACCTTATTAGGAAGGGTGACAAGGCGGGATCTTCCTAAGGCACCCCCG
CTTGCAAAGCTTGGGACTCGCACCCTCCCCCAAGGGCCCGGTTGTCCACC
TCGCCCAGAAAAACGGCTCCCCCCCCCCACCCAACAGCCCTCGAACCTGC
CCAACAAGCACAATTACAACAAACTGCCCCCCCGCTTCACCCTGTCTACC
GCCCTACGACACTGCCCCCCCCCCACCCCACCCCGGCCTCCCCCCCCACA
CCGCTCCCCTCATTCCCCCCCCCACACGCGCTGCGCCTGGCCACGACCCC
CGCAGTCTCCACTCTCCTCACAATCGCTATAATTACAGAATAGACCCCCT
CCTCTCATCCTCCCCTTCTCCCA
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