DY260224

Overview
NameDY260224
Unique NameDY260224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length775
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.634e-37
Identity = 76/122 (62.30%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.634e-37
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 408
            MGRV TKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG+ THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D + VD++T DML +LG   I
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114
The following BLAST results are available for this feature:
BLAST of DY260224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_MOUSE9.578e-3862.3040S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU9.578e-3862.3040S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN9.578e-3862.3040S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA9.578e-3862.3040S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR9.578e-3862.3040S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA9.578e-3862.3040S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK9.578e-3862.3040S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA9.578e-3862.3040S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17_RAT1.634e-3762.3040S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]
RS17A_SCHPO1.634e-3766.6740S ribosomal protein S17-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260224 ID=DY260224; Name=DY260224; organism=Citrus clementina; type=EST; length=775bp
CTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGCAGCCGC
CGCTTCTTAAACTGAAATGGGTCGTGTTCCTACCAAGACCGTGAAGAAGT
CCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGACTTC
CATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAG
GCTGCGTAACAAAATTGCTGGGTTCCCAACCCATTTGATGAAGAGGATTC
AGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGC
GAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAGACTGATGA
AATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCTTGGCATGT
CTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGATTGCTCCT
CCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAATTGAGGCTT
TGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATCAGTACTTC
TTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACTATTTTAAG
AAGGGTGTTTAGTTAAAACTTGAACTCTGGCATCATACTTAGTTGATTTA
ATGGACTTGTTTTGTCTTTTCCTTTTATTTGTTTTACTGGGACGCAACCT
ACTGAAGTTATAACGCCCATTAGTTTTGGCAAAAAAAAAAAAAAAAAAAA
AAAAAAACCCACCTTTCCTGTACAA
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