DY260224

Overview
NameDY260224
Unique NameDY260224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length775
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9871 contig Ccv1_Contig9871:47..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.359e-36
Identity = 75/122 (61.48%), Postives = 100/122 (81.97%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK+++ +IE+YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T DML  L  ++I+GL   +P
Sbjct:    1 MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 122          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.171e-35
Identity = 74/114 (64.91%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 408
            MGRV TKT+KK+S+ +IE+YY+R+T+DF TNK+I+EEVAIIP+K LRNKIAGF THLMKR++   VRGIS+KLQEEERERR ++VPD SA++ D I+VD ET +ML  L  ++I
Sbjct:    1 MGRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKIAGFVTHLMKRLRHSQVRGISIKLQEEERERRDNYVPDVSALEQDIIEVDPETKEMLKHLDFNNI 114          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_DROME (40S ribosomal protein S17 OS=Drosophila melanogaster GN=RpS17 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.529e-35
Identity = 75/124 (60.48%), Postives = 98/124 (79.03%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQS 438
            MGRV TKTVKK+++ +IE+YY+R+TLDFHTNK+I EEVAIIP+K LRNKIAG+ THLM R++   VRGIS+KLQEEERERR ++VP  SA++ D I+VD +T +ML  L   +I GL   +P +
Sbjct:    1 MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNIRGLQLTQPNT 124          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_NEUCR (40S ribosomal protein S17 OS=Neurospora crassa GN=rps-17 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.407e-35
Identity = 79/134 (58.96%), Postives = 99/134 (73.88%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAI------KTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 450
            MGRV TKTVKKS++ +IERYY ++TLDF TNK+I +E+AII SKRLRNKIAG+ THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ SA+      ++ ++ VD ET D+L  LG   I   V V P +   P
Sbjct:    1 MGRVRTKTVKKSAKVIIERYYPKLTLDFETNKRICDEIAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSALDFTQNSESGQLDVDTETKDLLKHLGFDSIP--VNVIPVTQAQP 132          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17B_YEAST (40S ribosomal protein S17-B OS=Saccharomyces cerevisiae GN=RPS17B PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.096e-33
Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE----IKVDKETLDMLAALGMSDISGLVEVEPQ 435
            MGRV TKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG+ THLMKRIQKGPVRGIS KLQEEERER+  +VP+ SA+        + VD +T D++ +LG+     ++ V  Q
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQ 127          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17A_YEAST (40S ribosomal protein S17-A OS=Saccharomyces cerevisiae GN=RPS17A PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.096e-33
Identity = 72/127 (56.69%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE----IKVDKETLDMLAALGMSDISGLVEVEPQ 435
            MGRV TKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG+ THLMKRIQKGPVRGIS KLQEEERER+  +VP+ SA+        + VD +T D++ +LG+     ++ V  Q
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLSVINVSAQ 127          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_DICDI (40S ribosomal protein S17 OS=Dictyostelium discoideum GN=rps17 PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.441e-33
Identity = 68/106 (64.15%), Postives = 90/106 (84.91%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDML 384
            MGRV TKT+K++S+ +IE++Y R+T DF TNK+  +++A IPSKRLRNKIAGF THLM+RI  GPVRGIS KLQEEERE+R ++VP ESAIKT+E+K+D++  +ML
Sbjct:    1 MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKIAGFCTHLMRRIANGPVRGISYKLQEEEREKRDNYVPQESAIKTNEVKIDRDVEEML 106          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_CAEEL (40S ribosomal protein S17 OS=Caenorhabditis elegans GN=rps-17 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33
Identity = 72/115 (62.61%), Postives = 92/115 (80.00%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDE---IKVDKETLDMLAALGMS 402
            M RV TKTVKK+SR +IE+YY+RMT DFH NK++ +EVAII SK LRNKIAG+ THLM+RI++GPVRGIS+KLQEEERERR +++P+ S +   +   IKVD +T DML A G +
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_ENCCU (40S ribosomal protein S17 OS=Encephalitozoon cuniculi GN=RPS17 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 43/110 (39.09%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALG 396
            MG V  K VK+++R + E+Y+ R+   F  N  ++++VA++ SK+L+N+IAG+ T L K+I KG    + +K  EEERER+ + +P ES +  D ++VD  T++M+   G
Sbjct:    1 MGCVRNKIVKRAARTIAEKYFQRLDSTFDHNLLVVQDVAVVQSKKLKNEIAGYLTSLYKKILKGTYNKVYIKSHEEERERKENVIPKESMLDVDCVEVDDVTMEMIKRYG 110          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17E_METJA (30S ribosomal protein S17e OS=Methanocaldococcus jannaschii GN=rps17e PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 30/62 (48.39%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQ 252
            MGR+    +K+++ ++I++Y    T DF TNK++LEEVA I +KRLRN+IAG+ TH M+++Q
Sbjct:    1 MGRIRQTLIKRTAMELIKKYRDLFTTDFETNKRVLEEVAQISTKRLRNRIAGYITHKMRQLQ 62          
The following BLAST results are available for this feature:
BLAST of DY260224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_SPOFR2.359e-3661.4840S ribosomal protein S17 OS=Spodoptera frugiperda... [more]
RS17_ANOGA1.171e-3564.9140S ribosomal protein S17 OS=Anopheles gambiae GN=... [more]
RS17_DROME1.529e-3560.4840S ribosomal protein S17 OS=Drosophila melanogast... [more]
RS17_NEUCR3.407e-3558.9640S ribosomal protein S17 OS=Neurospora crassa GN=... [more]
RS17B_YEAST1.096e-3356.6940S ribosomal protein S17-B OS=Saccharomyces cerev... [more]
RS17A_YEAST1.096e-3356.6940S ribosomal protein S17-A OS=Saccharomyces cerev... [more]
RS17_DICDI2.441e-3364.1540S ribosomal protein S17 OS=Dictyostelium discoid... [more]
RS17_CAEEL3.189e-3362.6140S ribosomal protein S17 OS=Caenorhabditis elegan... [more]
RS17_ENCCU4.942e-1839.0940S ribosomal protein S17 OS=Encephalitozoon cunic... [more]
RS17E_METJA5.851e-1148.3930S ribosomal protein S17e OS=Methanocaldococcus j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260224 ID=DY260224; Name=DY260224; organism=Citrus clementina; type=EST; length=775bp
CTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGCAGCCGC
CGCTTCTTAAACTGAAATGGGTCGTGTTCCTACCAAGACCGTGAAGAAGT
CCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGACTTC
CATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAG
GCTGCGTAACAAAATTGCTGGGTTCCCAACCCATTTGATGAAGAGGATTC
AGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGC
GAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAGACTGATGA
AATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCTTGGCATGT
CTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGATTGCTCCT
CCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAATTGAGGCTT
TGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATCAGTACTTC
TTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACTATTTTAAG
AAGGGTGTTTAGTTAAAACTTGAACTCTGGCATCATACTTAGTTGATTTA
ATGGACTTGTTTTGTCTTTTCCTTTTATTTGTTTTACTGGGACGCAACCT
ACTGAAGTTATAACGCCCATTAGTTTTGGCAAAAAAAAAAAAAAAAAAAA
AAAAAAACCCACCTTTCCTGTACAA
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