DY260239

Overview
NameDY260239
Unique NameDY260239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1000
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.219e-54
Identity = 91/136 (66.91%), Postives = 110/136 (80.88%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPAD 462
            M FVK  K+K YFKR+QVK+KRRREGKTDY AR RLI QDKNKYNTPKYR VVRF+N+DI  Q+  + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G  E TGE+++V+P +
Sbjct:    1 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYFARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVE 136          

HSP 2 Score: 43.5134 bits (101), Expect = 1.219e-54
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 3
Query:  525 RVFGAPKGALDGGLDFPHSDKKFAGFSKDGK 617
            RVFGA KGA+DGGL+  HS K+F GF  + K
Sbjct:  158 RVFGAMKGAVDGGLNILHSTKRFPGFDSESK 188          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 4.590e-54
Identity = 95/133 (71.43%), Postives = 108/133 (81.20%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVE 453
            M  VK  K+KAYFKR+QVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI+AQ+  + I GD V+A+AYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D  Y+GH E TGEDY+VE
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVE 133          

HSP 2 Score: 40.0466 bits (92), Expect = 4.590e-54
Identity = 15/43 (34.88%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGFSKDGK 617
            L +G ++    +++F   KG  DGG++ PHS+ +F GF ++ K
Sbjct:  145 LDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESK 187          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.017e-53
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVE 453
            M  VK  K+KAYFKR+QVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKD++AQ+  + I GD V+A+AY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D  Y+GH E TGEDY+VE
Sbjct:    1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVE 133          

HSP 2 Score: 40.0466 bits (92), Expect = 1.017e-53
Identity = 15/43 (34.88%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGFSKDGK 617
            L +G ++    +++F   KG  DGG++ PHS+ +F GF ++ K
Sbjct:  145 LDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESK 187          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.158e-52
Identity = 88/138 (63.77%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTK 468
            M F++  K+KAYF+RFQVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D +
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNE 138          

HSP 2 Score: 47.7506 bits (112), Expect = 4.158e-52
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  522 NRVFGAPKGALDGGLDFPHSDKKFAGFSKD 611
            NRVFGA KGA DGGL  PHS+K+F G+S D
Sbjct:  157 NRVFGALKGACDGGLHVPHSEKRFPGYSVD 186          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 5.421e-52
Identity = 88/138 (63.77%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTK 468
            M F++  K+KAYF+RFQVK++RRREGKTDY AR RL+ QDKNKY++PKYR VVR TNK +I QIVS+ +VGD V A+A + EL  YG++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D +
Sbjct:    1 MTFLRVVKNKAYFRRFQVKFRRRREGKTDYYARRRLVAQDKNKYDSPKYRLVVRLTNKRVICQIVSSTLVGDKVHASADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNE 138          

HSP 2 Score: 47.7506 bits (112), Expect = 5.421e-52
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  522 NRVFGAPKGALDGGLDFPHSDKKFAGFSKD 611
            NRVFGA KGA DGGL  PHS+K+F G+S D
Sbjct:  157 NRVFGALKGACDGGLHVPHSEKRFPGYSVD 186          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.517e-51
Identity = 85/133 (63.91%), Postives = 107/133 (80.45%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVE 453
            MAFVKA K+KAYFKRFQVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  ++ Q++ A + GD ++ +A + EL RYG++VGLTNY+AAY TGLLLARR+LK   + DE++G  + +GE+Y +E
Sbjct:    1 MAFVKAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIE 133          

HSP 2 Score: 48.521 bits (114), Expect = 4.517e-51
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3
Query:  522 NRVFGAPKGALDGGLDFPHSDKKFAGFSK 608
            NRVFGA KGA DGGL  PHS+K+F GF+K
Sbjct:  157 NRVFGAMKGACDGGLHIPHSNKRFPGFTK 185          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.327e-50
Identity = 89/137 (64.96%), Postives = 105/137 (76.64%), Query Frame = 1
Query:   61 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTKE 471
            FV   K+KAYFKR+Q K+KRRREGKTDY AR RL  QDKNKYNTPKYR VVR TNKDIIAQI  A + GD ++ +AYAHELPRYG+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G+++  E AD  E
Sbjct:   13 FVAVLKNKAYFKRYQPKFKRRREGKTDYFARKRLCVQDKNKYNTPKYRLVVRVTNKDIIAQIAYARLQGDVIVTSAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEF-YEEADAAE 148          

HSP 2 Score: 41.2022 bits (95), Expect = 1.327e-50
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 3
Query:  525 RVFGAPKGALDGGLDFPHSDKKFAGFSKDGK 617
            R+FG  KG  D G+D PHS K+F GF+ DGK
Sbjct:  168 RIFGVLKGCADAGIDIPHSPKRFPGFA-DGK 197          

HSP 3 Score: 22.3274 bits (46), Expect = 1.327e-50
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 2
Query:  476 FRAPLDVGLIKTTTG 520
            FR  LD GL +T+TG
Sbjct:  152 FRCYLDTGLARTSTG 166          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_NEUCR (60S ribosomal protein L5 OS=Neurospora crassa GN=rpl-5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.889e-50
Identity = 92/139 (66.19%), Postives = 106/139 (76.26%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTKE 471
            MAF K  K+ AY+ RFQ KYKRRREGKTDY AR RLI Q KNKYN PKYR VVRFTN+DII QIVS+ I GD V A+AY+HEL  YG+E GLTN+AAAY TGLLLARRVLK L +D+ ++G  EA GE    E A+T +
Sbjct:    1 MAFHKLVKNSAYYSRFQTKYKRRREGKTDYYARKRLITQAKNKYNAPKYRLVVRFTNRDIILQIVSSEITGDKVFASAYSHELKAYGIEHGLTNWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDD 139          

HSP 2 Score: 40.817 bits (94), Expect = 2.889e-50
Identity = 18/43 (41.86%), Postives = 27/43 (62.79%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGFSKDGK 617
            L +G ++     RVFGA KGA DGG+  PHS+ +F G+  + +
Sbjct:  149 LDVGLARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESE 191          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.087e-49
Identity = 86/138 (62.32%), Postives = 109/138 (78.99%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTK 468
            M FVK  K+KAY+ R+QV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+IAQ+V + IVGD VL AAYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++ D Y+G  +  G+ + V+P D K
Sbjct:    1 MGFVKVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDK 138          

HSP 2 Score: 38.891 bits (89), Expect = 1.087e-49
Identity = 16/44 (36.36%), Postives = 28/44 (63.64%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGFSKDGKR 620
            L +G ++     +VF   KGA+DGG+  PH + +FAG++ + K+
Sbjct:  146 LDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKK 189          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.359e-48
Identity = 111/232 (47.84%), Postives = 141/232 (60.78%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTKEALPCSP*CWAHQN-NHWKTVCLVLRREH*MVDWTFLIVTRSLPVFP----RTASAGCRRSPQYIYGGHVAALLSTLEGR*PQKLSLSLSEYLQ 735
            M FVK  K+K YFKRFQVKYKRRREGKTDY AR RL  QDK+KYNTPKYR +VR +NKDI  QI  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     P +  C+         T   +       VD   L +  S   FP     + S       Q+I+  H+A  + TLE   P+      S+Y++
Sbjct:    1 MGFVKVVKNKQYFKRFQVKYKRRREGKTDYYARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDG---PGAFRCYLDTGLMRTTTGARIFGAMKGAVDGG-LNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIK 228          
The following BLAST results are available for this feature:
BLAST of DY260239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL5_HELAN1.219e-5466.9160S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]
RL5_CAEBR4.590e-5471.4360S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL1.017e-5369.9260S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_THEPA4.158e-5263.7760S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN5.421e-5263.7760S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5_EIMTE4.517e-5163.9160S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_OIKDI1.327e-5064.9660S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_NEUCR2.889e-5066.1960S ribosomal protein L5 OS=Neurospora crassa GN=r... [more]
RL5_DICDI1.087e-4962.3260S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_LYSTE2.359e-4847.8460S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260239 ID=DY260239; Name=DY260239; organism=Citrus clementina; type=EST; length=1000bp
CTTAGCCGTCTCTTCTTCCCTCTCCTTTTCTCTTACAATTCGAAAGTTCG
AGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGT
TCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCT
AGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCCAAGTA
CCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGT
CAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAG
CTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTA
TTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGG
ATGATGAGTATGAGGGCCATGTTGAGGCTACTGGAGAGGATTACTCTGTC
GAACCCGCTGATACCAAGGAGGCCCTTCCGTGCTCCCCTTGATGTTGGGC
TCATCAAAACAACCACTGGAAAACCGTGTGTTTGGTGCTCCGAAGGGAGC
ATTAGATGGTGGATTGGACTTTCCTCATAGTGACAAGAAGTTTGCCGGTT
TTTCCAAGGACGGCAAGCGCCGGATGCCGAAGGTCCCCGCAGTATATCTA
CGGTGGACATGTCGCTGCCTTACTGAGTACCTTGGAGGGAAGATGACCCC
AAAAACTATCACTCTCCCTTTCCGAATACCTCCAACAAAGGGAATGATGG
CGAAGGGCTCGGAGGCCCCGTCCAACAAAGGTCCAGCCCCCCTTTCCTCC
CAACCCTCCCCACAAAAAATCTCGAAAAACCCCCCCCCCACCCAACAACA
AAGGCCCAATTTTTACAAAAACCCTACTTACAAGGAAAACGAAAGCCAAA
CCCCGGTTTAAAACCGCTCAAGCCCCTTAACCCCGCGCCTTTGACGCCGA
TCACCACCTGGAACCCCCTCCCACCTCCTGCTAACCCAATTCCAAAGCGG
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