DY260239

Overview
NameDY260239
Unique NameDY260239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1000
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 6.864e-48
Identity = 110/231 (47.62%), Postives = 140/231 (60.61%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPADTKEALPCSP*CWAHQN-NHWKTVCLVLRREH*MVDWTFLIVTRSLPVFP----RTASAGCRRSPQYIYGGHVAALLSTLEGR*PQKLSLSLSEYL 732
            M FVK  K+K YFKR+QV+++RRREGKTDY AR RLI QDKNKYNTPK+R +VR +N+DI  QI  A I GD ++ AAY+HELPRYG++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     P +  C+         T   V       VD   L +  S+  FP       S        +I+G HVA  + TLE    +      S+Y+
Sbjct:    1 MGFVKVVKNKQYFKRYQVRFRRRREGKTDYYARKRLIFQDKNKYNTPKFRLIVRLSNRDITCQIAYARIEGDRIVCAAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEG---PAAFRCYLDVGLARTTTGARVFGAMKGAVDGG-LNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYI 227          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.997e-47
Identity = 107/230 (46.52%), Postives = 141/230 (61.30%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPA-DTKEALPCSP*CWAHQNNHWKTVCLVLRREH*MVDWTFLIVTRSLPVFPRTASAGCRRS--PQYIYGGHVAALLSTLEGR*PQKLSLSLSEYLQ 735
            M +VK  K+  YF R+QVKY+RRR+GKTDYRAR+RL+ QDKNKYNT KYR VVRF+NK++  QIV + I GD V+AAAY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L + D Y+G  E  GEDY+VEP  D  +   C       + +    V   ++     +D   L +  +   F   A          +YIYGGHVA    T++   P+K     S Y++
Sbjct:    1 MGYVKVVKTSPYFSRYQVKYRRRRQGKTDYRARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKG---ALDGG-LDIPHNEKRFVGYADKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVE 226          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 2.177e-47
Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGE 438
            MAF K  KS AY  RFQ  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRFTNKDII QI+S+ I GD VLAAAY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE
Sbjct:    1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGE 128          

HSP 2 Score: 40.817 bits (94), Expect = 2.177e-47
Identity = 21/54 (38.89%), Postives = 31/54 (57.41%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGFSKDGKRRMPKVPAVYL 650
            L +G  +     RVFGA KGA DGGL  PHS+ +F G+  + +   P++   Y+
Sbjct:  146 LDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYI 199          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 2.699e-44
Identity = 87/124 (70.16%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVE 426
            M FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DII QI  A I GD ++ AAYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.044e-43
Identity = 78/128 (60.94%), Postives = 95/128 (74.22%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGE 438
            M F+KA KS  YF R+Q KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGE 128          

HSP 2 Score: 41.5874 bits (96), Expect = 1.044e-43
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGF 602
            L +G  +    +RVFGA KGA DGGL  PHS  +F GF
Sbjct:  146 LDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGF 183          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.044e-43
Identity = 78/128 (60.94%), Postives = 95/128 (74.22%), Query Frame = 1
Query:   55 MAFVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGE 438
            M F+KA KS  YF R+Q KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +  QIVS+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE
Sbjct:    1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGE 128          

HSP 2 Score: 41.5874 bits (96), Expect = 1.044e-43
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3
Query:  489 LMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKFAGF 602
            L +G  +    +RVFGA KGA DGGL  PHS  +F GF
Sbjct:  146 LDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGF 183          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.000e-14
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            A+  R+++ ++RRREGKTDYRAR +++        T K R VVR T   +IAQI++  + GD  L +A++ +L + G   G +N AAAY TG L  +R LK
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK 95          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.712e-14
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATG 435
            R+ V+++RRREG+TDY  R RLI   +N       R VVR TN+ II Q+++A + GD  L    + EL  +G +  L N  AAY TG+L A R  K       YEG +   G
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQKA-----GYEGGIADIG 106          

HSP 2 Score: 29.261 bits (64), Expect = 1.712e-14
Identity = 16/38 (42.11%), Postives = 22/38 (57.89%), Query Frame = 3
Query:  462 YQGGPSVLPLMLGSSKQPLENRVFGAPKGALDGGLDFP 575
            Y+GG + + L + S+      RVF A KGA+D G D P
Sbjct:   98 YEGGIADIGLQVASTGA----RVFAAIKGAVDAGFDVP 131          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.214e-14
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLL 369
            R++V ++RRREGKTDY  R++LI        + K R VVR T+  +IAQI+     GD VLAAA + EL + +G +    N +AAY TGLL+
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLI 90          

HSP 2 Score: 32.3426 bits (72), Expect = 2.214e-14
Identity = 19/55 (34.55%), Postives = 28/55 (50.91%), Query Frame = 3
Query:  429 YWRGLLCRTR*YQGGPSVLPLMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKF 593
            Y  GLL   +  + G     L +G  +    +RV+ A KGA+D GL+ P S+  F
Sbjct:   84 YLTGLLIGYKAQEAGVEEAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVF 138          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.229e-14
Identity = 46/97 (47.42%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            R+ V ++RRREG+T+Y AR RL+   K        R VVR TN+ II QI++A++ GD    AA + EL ++G E  L N  AAY TG+LLA R LK
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK 95          
The following BLAST results are available for this feature:
BLAST of DY260239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL5_ANOGA6.864e-4847.6260S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_DUNSA1.997e-4746.5260S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_YEAST2.177e-4766.4160S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_PIG2.699e-4470.1660S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL5B_SCHPO1.044e-4360.9460S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO1.044e-4360.9460S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL18_METTH1.000e-1442.5750S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_METLZ1.712e-1440.7150S ribosomal protein L18P OS=Methanocorpusculum l... [more]
RL18_UNCMA2.214e-1445.6550S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_METHJ2.229e-1447.4250S ribosomal protein L18P OS=Methanospirillum hun... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260239 ID=DY260239; Name=DY260239; organism=Citrus clementina; type=EST; length=1000bp
CTTAGCCGTCTCTTCTTCCCTCTCCTTTTCTCTTACAATTCGAAAGTTCG
AGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGT
TCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCT
AGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCCAAGTA
CCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGT
CAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAG
CTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTA
TTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGG
ATGATGAGTATGAGGGCCATGTTGAGGCTACTGGAGAGGATTACTCTGTC
GAACCCGCTGATACCAAGGAGGCCCTTCCGTGCTCCCCTTGATGTTGGGC
TCATCAAAACAACCACTGGAAAACCGTGTGTTTGGTGCTCCGAAGGGAGC
ATTAGATGGTGGATTGGACTTTCCTCATAGTGACAAGAAGTTTGCCGGTT
TTTCCAAGGACGGCAAGCGCCGGATGCCGAAGGTCCCCGCAGTATATCTA
CGGTGGACATGTCGCTGCCTTACTGAGTACCTTGGAGGGAAGATGACCCC
AAAAACTATCACTCTCCCTTTCCGAATACCTCCAACAAAGGGAATGATGG
CGAAGGGCTCGGAGGCCCCGTCCAACAAAGGTCCAGCCCCCCTTTCCTCC
CAACCCTCCCCACAAAAAATCTCGAAAAACCCCCCCCCCACCCAACAACA
AAGGCCCAATTTTTACAAAAACCCTACTTACAAGGAAAACGAAAGCCAAA
CCCCGGTTTAAAACCGCTCAAGCCCCTTAACCCCGCGCCTTTGACGCCGA
TCACCACCTGGAACCCCCTCCCACCTCCTGCTAACCCAATTCCAAAGCGG
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