DY260239
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 9.067e-12 Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1 Query: 100 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPA 459 ++V++KRRREGKT+Y R +L++ DK R VVR T+ I Q+V GD L +A + L +G N +AAY TG L ++ L EG+ E T D V+P+ Sbjct: 7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKALN--------EGYDE-TILDIGVQPS 110 HSP 2 Score: 27.335 bits (59), Expect = 9.067e-12 Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3 Query: 525 RVFGAPKGALDGGLDFPHSD 584 +++ KGALD GL PH+D Sbjct: 115 KIYAVLKGALDAGLYIPHND 134
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.306e-11 Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387 A+ +++V ++RRREGKT++R R++L+ TP R V R + +I+AQIV + VGD ++ +A++ E+ + G + N AAY TGLLL ++ LK Sbjct: 2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK 95
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.012e-11 Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1 Query: 97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387 R++V +RRREGKT+YR R++L+ K R VVR TN+ +IAQIV GD V+ + L +G + L N AAY TG+L+A++ L+ Sbjct: 8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ 97
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11 Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1 Query: 97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVL 384 R+ V ++RRREGKTDY R +LI ++ R VVR TN+ II Q++ A + GD L A + EL YG + +N AAY TG+L A + L Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFAVKAL 94
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 7.303e-11 Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1 Query: 85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLL 369 A+ R++V ++RRREGKT+YR R++L+ K R VVR + IAQI+ + GD L +A+ EL R +G + N +AY GLL+ Sbjct: 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLI 90 HSP 2 Score: 31.187 bits (69), Expect = 7.303e-11 Identity = 20/55 (36.36%), Postives = 26/55 (47.27%), Query Frame = 3 Query: 429 YWRGLLCRTR*YQGGPSVLPLMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKF 593 Y GLL + Q G L +G + VF KGA+D GL+ PHS + F Sbjct: 84 YLLGLLIGYKAKQAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF 138
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11 Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387 +F+V ++RRREGKTD+R R+ L+ K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK 95
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11 Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1 Query: 97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387 +F+V ++RRREGKTD+R R+ L+ K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK 95
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11 Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 1 Query: 85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 387 A+ R++V +RRREGKT+Y R ++ K RFVVR TN+ I Q++ A GD +AAA++ EL +YG G N AAY TGLL A R LK Sbjct: 2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK 96 The following BLAST results are available for this feature:
BLAST of DY260239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260239 ID=DY260239; Name=DY260239; organism=Citrus clementina; type=EST; length=1000bpback to top |