DY260239

Overview
NameDY260239
Unique NameDY260239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1000
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METST (50S ribosomal protein L18P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 9.067e-12
Identity = 43/120 (35.83%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  100 FQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGHVEATGEDYSVEPA 459
            ++V++KRRREGKT+Y  R +L++ DK        R VVR T+   I Q+V     GD  L +A +  L  +G      N +AAY TG L  ++ L         EG+ E T  D  V+P+
Sbjct:    7 YKVQFKRRREGKTNYNKRYKLVDLDKT-------RMVVRITSNHTITQLVKIGENGDETLVSATSKNLKEFGWLGNGKNTSAAYLTGYLFGKKALN--------EGYDE-TILDIGVQPS 110          

HSP 2 Score: 27.335 bits (59), Expect = 9.067e-12
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 3
Query:  525 RVFGAPKGALDGGLDFPHSD 584
            +++   KGALD GL  PH+D
Sbjct:  115 KIYAVLKGALDAGLYIPHND 134          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_META3 (50S ribosomal protein L18P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.306e-11
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            A+  +++V ++RRREGKT++R R++L+        TP  R V R +  +I+AQIV  + VGD ++ +A++ E+ + G +    N  AAY TGLLL ++ LK
Sbjct:    2 AHGAKYRVPFRRRREGKTNFRLRLKLLLS-----RTP--RLVARKSLNNIVAQIVEYDEVGDKIVVSAHSKEIVKLGYKGHCGNVPAAYLTGLLLGKKALK 95          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_ARCFU (50S ribosomal protein L18P OS=Archaeoglobus fulgidus GN=rpl18p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.012e-11
Identity = 40/97 (41.24%), Postives = 58/97 (59.79%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            R++V  +RRREGKT+YR R++L+   K        R VVR TN+ +IAQIV     GD V+    +  L  +G +  L N  AAY TG+L+A++ L+
Sbjct:    8 RYKVPLRRRREGKTNYRKRLKLLLSRKP-------RLVVRITNRRVIAQIVEYAPEGDRVVVGVDSAMLREFGWKGDLNNTPAAYLTGILIAKKALQ 97          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVL 384
            R+ V ++RRREGKTDY  R +LI  ++        R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A + L
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFAVKAL 94          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_PYRFU (50S ribosomal protein L18P OS=Pyrococcus furiosus GN=rpl18p PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 7.303e-11
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLL 369
            A+  R++V ++RRREGKT+YR R++L+   K        R VVR +    IAQI+  +  GD  L +A+  EL R +G +    N  +AY  GLL+
Sbjct:    2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGKP-------RLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLI 90          

HSP 2 Score: 31.187 bits (69), Expect = 7.303e-11
Identity = 20/55 (36.36%), Postives = 26/55 (47.27%), Query Frame = 3
Query:  429 YWRGLLCRTR*YQGGPSVLPLMLGSSKQPLENRVFGAPKGALDGGLDFPHSDKKF 593
            Y  GLL   +  Q G     L +G       + VF   KGA+D GL+ PHS + F
Sbjct:   84 YLLGLLIGYKAKQAGIEEAILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIF 138          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METM7 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK 95          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   97 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK 95          
BLAST of DY260239 vs. ExPASy Swiss-Prot
Match: RL18_HYPBU (50S ribosomal protein L18P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11
Identity = 45/102 (44.12%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   85 AYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLK 387
            A+  R++V  +RRREGKT+Y  R  ++   K        RFVVR TN+ I  Q++ A   GD  +AAA++ EL  +YG   G  N  AAY TGLL A R LK
Sbjct:    2 AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKP-------RFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALK 96          
The following BLAST results are available for this feature:
BLAST of DY260239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RL18_METST9.067e-1235.8350S ribosomal protein L18P OS=Methanosphaera stadt... [more]
RL18_META32.306e-1138.6150S ribosomal protein L18P OS=Methanococcus aeolic... [more]
RL18_ARCFU3.012e-1141.2450S ribosomal protein L18P OS=Archaeoglobus fulgid... [more]
RL18_METPE6.710e-1142.7150S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_PYRFU7.303e-1138.5450S ribosomal protein L18P OS=Pyrococcus furiosus ... [more]
RL18_METM78.764e-1139.1850S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_METM68.764e-1139.1850S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_HYPBU8.764e-1144.1250S ribosomal protein L18P OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260239 ID=DY260239; Name=DY260239; organism=Citrus clementina; type=EST; length=1000bp
CTTAGCCGTCTCTTCTTCCCTCTCCTTTTCTCTTACAATTCGAAAGTTCG
AGCAATGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGT
TCCAGGTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCT
AGAATTCGCCTGATTAATCAGGACAAGAATAAGTACAACACACCCAAGTA
CCGATTTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGT
CAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAG
CTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTA
TTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGG
ATGATGAGTATGAGGGCCATGTTGAGGCTACTGGAGAGGATTACTCTGTC
GAACCCGCTGATACCAAGGAGGCCCTTCCGTGCTCCCCTTGATGTTGGGC
TCATCAAAACAACCACTGGAAAACCGTGTGTTTGGTGCTCCGAAGGGAGC
ATTAGATGGTGGATTGGACTTTCCTCATAGTGACAAGAAGTTTGCCGGTT
TTTCCAAGGACGGCAAGCGCCGGATGCCGAAGGTCCCCGCAGTATATCTA
CGGTGGACATGTCGCTGCCTTACTGAGTACCTTGGAGGGAAGATGACCCC
AAAAACTATCACTCTCCCTTTCCGAATACCTCCAACAAAGGGAATGATGG
CGAAGGGCTCGGAGGCCCCGTCCAACAAAGGTCCAGCCCCCCTTTCCTCC
CAACCCTCCCCACAAAAAATCTCGAAAAACCCCCCCCCCACCCAACAACA
AAGGCCCAATTTTTACAAAAACCCTACTTACAAGGAAAACGAAAGCCAAA
CCCCGGTTTAAAACCGCTCAAGCCCCTTAACCCCGCGCCTTTGACGCCGA
TCACCACCTGGAACCCCCTCCCACCTCCTGCTAACCCAATTCCAAAGCGG
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