DY260275

Overview
NameDY260275
Unique NameDY260275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.725e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 304
            +++P+KNR  I + LF+EGV  AKKD ++ K PE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10B_SCHPO (40S ribosomal protein S10-B OS=Schizosaccharomyces pombe GN=rps10b PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.460e-26
Identity = 55/98 (56.12%), Postives = 75/98 (76.53%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA 316
            ++IP++NRK I Q LFQ+GV  AKKD+NL K PE+ VPNLQVIK  QS  SR Y++  + W  +Y+ LTN+G+E+LR YL+LP+E+VPAT K+  +PA
Sbjct:    1 MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPA 98          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10B_DROME (40S ribosomal protein S10b OS=Drosophila melanogaster GN=RpS10b PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.460e-26
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 310
            + +P+ +R  I +YLF+EGV  AKKD++  K PE++ +PNL VIK MQS  SR  V+E FAW HYYWYLTN+GIE LR+YL+LP EIVP+TLK+ A+
Sbjct:    1 MFMPKAHRVAIYEYLFKEGVIVAKKDFHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPEIVPSTLKRPAR 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_XENLA (40S ribosomal protein S10 OS=Xenopus laevis GN=rps10 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.907e-26
Identity = 56/97 (57.73%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 304
            +++P+K+R  I + LF+EGV  AKKD ++ K PE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++S
Sbjct:    1 MLMPKKDRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRS 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_DICDI (40S ribosomal protein S10 OS=Dictyostelium discoideum GN=rps10 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 1.615e-25
Identity = 53/95 (55.79%), Postives = 75/95 (78.95%), Query Frame = 2
Query:   26 IIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSA 307
            +IP +N+  I +YLFQEGV  A KD++LAK P+I+ V NL V+++++SFKSR++V ETF W +YYW LT +GI++LRTYL +P  +VPAT+KK A
Sbjct:    3 LIPTENKLAIYRYLFQEGVLVAPKDFHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPESVVPATMKKQA 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10A_SCHPO (40S ribosomal protein S10-A OS=Schizosaccharomyces pombe GN=rps10a PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.615e-25
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            ++IP++NRK I Q LF +GV  AKKD+NL K PE+ VPNLQVIK  QS  SR Y++  + W  +Y+ LTN+G+E+LR YL+LP+E+VPAT K+  +P
Sbjct:    1 MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRP 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10L_HUMAN (Putative 40S ribosomal protein S10-like protein OS=Homo sapiens GN=RPS10P5 PE=5 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.698e-25
Identity = 55/94 (58.51%), Postives = 72/94 (76.60%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATL 295
            +++P+KNR  I + LF+EGV  AKKD ++ K PE+   +VPNL V+K MQS KSR  V+E FAW H+YWYLTN+G ++LR YL+LP EIVPATL
Sbjct:    1 MLMPKKNRIAIHELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPPEIVPATL 94          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10A_DROME (40S ribosomal protein S10a OS=Drosophila melanogaster GN=RpS10a PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.698e-25
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 310
            + IP+ NR  I +YLF+EGV  AKKD  + K  E+D +PNLQVIK+MQS  SR +V+E FAW H+YW LTN+GIE LR YL+LP EIVP+TL ++ +
Sbjct:    1 MFIPKANRVAIYEYLFKEGVLVAKKDSPIQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQTTR 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10B_YEAST (40S ribosomal protein S10-B OS=Saccharomyces cerevisiae GN=RPS10B PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.194e-24
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPA 316
            +++P++ R +I QYLFQEGV  AKKD+N AK  EID  NL VIK +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P+
Sbjct:    1 MLMPKQERNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPS 98          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10A_YEAST (40S ribosomal protein S10-A OS=Saccharomyces cerevisiae GN=RPS10A PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.194e-24
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +++P+++R +I QYLFQEGV  AKKD+N AK  EID  NL VIK +QS  S+ YV+  F+W +YY+ LT +G+E+LR YLNLP  IVP T  +   P
Sbjct:    1 MLMPKEDRNKIHQYLFQEGVVVAKKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNP 97          
The following BLAST results are available for this feature:
BLAST of DY260275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS10_BOVIN1.725e-2759.7940S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]
RS10B_SCHPO1.460e-2656.1240S ribosomal protein S10-B OS=Schizosaccharomyces... [more]
RS10B_DROME1.460e-2658.7640S ribosomal protein S10b OS=Drosophila melanogas... [more]
RS10_XENLA1.907e-2657.7340S ribosomal protein S10 OS=Xenopus laevis GN=rps... [more]
RS10_DICDI1.615e-2555.7940S ribosomal protein S10 OS=Dictyostelium discoid... [more]
RS10A_SCHPO1.615e-2554.6440S ribosomal protein S10-A OS=Schizosaccharomyces... [more]
RS10L_HUMAN4.698e-2558.51Putative 40S ribosomal protein S10-like protein OS... [more]
RS10A_DROME4.698e-2557.7340S ribosomal protein S10a OS=Drosophila melanogas... [more]
RS10B_YEAST5.194e-2452.0440S ribosomal protein S10-B OS=Saccharomyces cerev... [more]
RS10A_YEAST5.194e-2452.5840S ribosomal protein S10-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260275 ID=DY260275; Name=DY260275; organism=Citrus clementina; type=EST; length=989bp
GCTCAATCCTCCCTTCCCAACCCTGATTATTCCAGAGAAGAACCGCAAAG
AAATCCGCCAGTACCTCTTCCAAGAGGGAGTATGCTATGCAAAGAAGGAT
TATAATCTTGCGAAGCCCCCAGAAATCGATGTTCCAAACCTGCAGGTGAT
TAAGCTGATGCAGAGCTTCAAATCTAGGGAGTATGTTCGTGAGACATTTG
CGTGGATGCACTATTATTGGTACCTTACGAATGATGGGATTGAGTTTTTG
AGGACTTACCTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAA
ATCCGCTAAGCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTC
CAAGGGGCCCACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGT
GAAGGGTACCGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGG
TGGAGCCCCTGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGAC
CTGGTTTTGGTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCA
GGATTTCCTTGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCCAA
ATTAGTGTTTCAAGTCCTTAGAACCAGTCTAATGCCCTTGTTGAATTTTC
TATAGTATTTCCGTAAGCCTTTAAGTACAATATTAAGTTCATTATGAAAT
CCTCCGTTTTTTCCCCCCCATGGCTGTTGGTTTAAATGGAACCCCCCCCA
CCATTTGCCTTAAAAAAAAAAAAAAAAAAAAACCCCCACTTCCTTTTACC
AAGGTTGGCCTTATAAAAAAGCCTTGCCTTACCCTTCGTTCGCCCCCAAC
CCGGCCACCACCCCCCCAATACAATCCTCTCTTCCCCCCCCCCCCCGAAT
CCCCCCTAAAACCACGCCAACAACCCGGGGCACCAACCGGTTCCCCGGCA
GCCTTGCCGCCCGGGCTCCAAAATTCCTGCAACCTAACC
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