DY260275

Overview
NameDY260275
Unique NameDY260275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: PLEC1_RAT (Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.550e-20
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 2 
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAK--PPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +++P    + I + LF+EGV  AKKD       P    V NLQV++ M S K+R  VRETFAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++  +P
Sbjct:    5 MLMPLDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: PLEC1_MOUSE (Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.550e-20
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 2 
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAK--PPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +++P    + I + LF+EGV  AKKD       P    V NLQV++ M S K+R  VRETFAW H+YWYLTN+GI+ LR YL+LP EIVPA+L++  +P
Sbjct:    5 MLMPLDRLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPASLQRVRRP 103
[Close]
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: PLEC1_HUMAN (Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 1.014e-19
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 2 
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAK--PPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +++P    + I + LF+EGV  AKKD       P    V NLQV++ M S ++R  VRETFAW H+YWYLTN+GI  LR YL+LP EIVPA+L++  +P
Sbjct:    5 MLMPRDQLRAIYEVLFREGVMVAKKDRRPRSLHPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRP 103
The following BLAST results are available for this feature:
BLAST of DY260275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PLEC1_RAT4.550e-2050.51Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1 SV=2[more]
PLEC1_MOUSE4.550e-2050.51Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2[more]
PLEC1_HUMAN1.014e-1949.49Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260275 ID=DY260275; Name=DY260275; organism=Citrus clementina; type=EST; length=989bp
GCTCAATCCTCCCTTCCCAACCCTGATTATTCCAGAGAAGAACCGCAAAG
AAATCCGCCAGTACCTCTTCCAAGAGGGAGTATGCTATGCAAAGAAGGAT
TATAATCTTGCGAAGCCCCCAGAAATCGATGTTCCAAACCTGCAGGTGAT
TAAGCTGATGCAGAGCTTCAAATCTAGGGAGTATGTTCGTGAGACATTTG
CGTGGATGCACTATTATTGGTACCTTACGAATGATGGGATTGAGTTTTTG
AGGACTTACCTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAA
ATCCGCTAAGCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTC
CAAGGGGCCCACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGT
GAAGGGTACCGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGG
TGGAGCCCCTGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGAC
CTGGTTTTGGTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCA
GGATTTCCTTGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCCAA
ATTAGTGTTTCAAGTCCTTAGAACCAGTCTAATGCCCTTGTTGAATTTTC
TATAGTATTTCCGTAAGCCTTTAAGTACAATATTAAGTTCATTATGAAAT
CCTCCGTTTTTTCCCCCCCATGGCTGTTGGTTTAAATGGAACCCCCCCCA
CCATTTGCCTTAAAAAAAAAAAAAAAAAAAAACCCCCACTTCCTTTTACC
AAGGTTGGCCTTATAAAAAAGCCTTGCCTTACCCTTCGTTCGCCCCCAAC
CCGGCCACCACCCCCCCAATACAATCCTCTCTTCCCCCCCCCCCCCGAAT
CCCCCCTAAAACCACGCCAACAACCCGGGGCACCAACCGGTTCCCCGGCA
GCCTTGCCGCCCGGGCTCCAAAATTCCTGCAACCTAACC
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