DY260306

Overview
NameDY260306
Unique NameDY260306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.093e-17
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  177 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPRK 509
            EW PG   P +L+GS PGD GFDPLGLA  PEN + + ++E+ + RWAML V G+L+PE       +   +W     G+A Y      + +  T+  IEF+   + E +R  + K+P K
Sbjct:   47 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK 164          

HSP 2 Score: 26.9498 bits (58), Expect = 4.093e-17
Identity = 16/57 (28.07%), Postives = 24/57 (42.11%), Query Frame = 1
Query:  559 KLGYPGGIFNPPNLHP----LMKQRRTNLANRKLAIFGIPGNYLFHHNVPSTGPIRN 717
            K  YPGG F+P           + +   + N +LA+    G  +     P TGP+ N
Sbjct:  164 KKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 220          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.622e-17
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  177 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPF 530
            +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE       +   +W     G+A Y      + +  T+  IEF+   +VE +R  +  + +K  P   F
Sbjct:   48 DWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF 173          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.292e-12
Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 3
Query:   96 SSGKLNREVALKPVSSSASFKVEAKKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 404
            ++GK     A  P SS   F     + +WL      A+P YL G  PGD G+D  GL+ DPE  K Y + EL+++RWAMLG +G   PE+  K G       W+ AG
Sbjct:   17 ATGKKTAAKAAAPKSSGVEF-YGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAG 122          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 6.414e-12
Identity = 51/145 (35.17%), Postives = 74/145 (51.03%), Query Frame = 3
Query:   21 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            MA  T   S+ V  R   S S  L G +    R+ A KP   +SS S    A +  +L  L+   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F
Sbjct:    1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 138          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.094e-11
Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = 3
Query:   21 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            MAT T Q SA     + +P     R + G+ G+++    +K    S  +  +  K        +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  K G+         G+A +F + S +F
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-------KFGEAVWFKAGSQIF 137          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 3
Query:  201 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ--WYDAG 404
            P YLNG + GD G+DP GL + PEN   Y   EL+++RWAMLG  G ++PE   K G    P+  W+  G
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTG 151          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11
Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 3
Query:    9 SSLNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            S++ +++      A    P AS+   + GS     R+   KP   S S    + + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F
Sbjct:    4 STMALSSPAFAGKAVKLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 139          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.866e-11
Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  171 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFH 464
            + +WL   ++  P YL G  PGD G+D  GL+ DPE  K Y + E++++RWA+LG +G+L PE+  T  G+    P W+ AG A+ F+     ++    L H
Sbjct:   44 RAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAG-AQIFSEGGLDYLGSPALIH 144          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.866e-11
Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 3
Query:    9 SSLNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            S++ +++      A    P AS+   + GS     R+   KP   S S    + + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+         G+A +F + S +F
Sbjct:    4 STMALSSPAFAGKAVNLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 139          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11
Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 3
Query:   78 SRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            S+ L G+   + +    K V+SS S      + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+         G+A +F + S +F
Sbjct:   26 SQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-------KFGEAVWFKAGSQIF 141          
The following BLAST results are available for this feature:
BLAST of DY260306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CB121_HORVU4.093e-1738.66Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC6.622e-1737.30Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2_CHLRE1.292e-1239.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ORYSJ6.414e-1235.17Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_SILPR1.094e-1131.25Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_ARATH1.429e-1145.71Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_ARATH1.429e-1130.82Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_CHLMO1.866e-1137.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_ARATH1.866e-1130.82Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB28_PEA2.437e-1133.33Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260306 ID=DY260306; Name=DY260306; organism=Citrus clementina; type=EST; length=1268bp
CATAACTCTCGTCCTTAAACATGGCAACCGTCACAACACAAGCCTCGGCC
GCCGTGTTCCGGCCATGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTC
GGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTT
CTTTCAAAGTTGAAGCCAAGAAGGGGGAGTGGTTACCGGGCTTGGCCTCA
CCAACTTACCTCAACGGCAGCCTCCCCGGTGACAATGGATTTGACCCCTT
GGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTATGTGCAAGCCGAGC
TTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTGGAATGTTGTTGCCC
GAAGTTTTCACAAAGATTGGAATTATTAATGTTCCTCAATGGTATGATGC
TGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCGTGATCGAGT
TCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGACATAAAGAAC
CCCAGGAAGTGTCAACCAAGACCCCCATTTTCAAGCAGTACAGCTTGCCC
TCCAAACGAAGTTGGGGTACCCCGGTGGCATCTTCAACCCCCCAAACTTG
CACCCCCTGATGAAGCAAAGGAGAACGAACCTTGCCAATCGGAAATTGGC
AATCTTCGGCATTCCTGGGAATTATCTGTTCCACCACAATGTCCCCAGCA
CAGGGCCCATTAGAAACACCTCCTGAAACACATCATTGAAACCCCAGGGC
CCACTCCCCATCGTCCCAACACTAAGTGCGTTATTTCACCCCCAAAACAG
ACCTAGTTCACTTCGAGATCTTCTGTCTTCTCTTTATGAAAACCCCACAT
CTCCTACAACTTTCCGATCTCAACTCCCACCACACTCTCACCCCCCTCAC
TCACCACTCTCATCCTCTCAACCCCCCAACCCTCCTAAGACTACCTCCAC
TTAGCCATATTATACCAACTCAATAAATACACAACTATACACTACACCCC
TACCCCTATCTCACCCAAACCATCCAACCTACCAAACAAGACATCATTCC
CACCCCCCAACACAACTTTTCTATTGTCTCTACAACACTCTCCCTAAGCC
TACCCTCATATCCTAACATCAGTCTATCAATTCACCACTCACACCTCTCA
CAACCCACACTCATACCCACTACCACTACAAAAACATCCCGAACAATCCA
CCTTACCAACACTATTCAATCTCTCATCCTAATAACTCCAAATTAACATT
TACTCTGCATCCCTCCCG
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