DY260306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 304.294 bits (778), Expect = 1.003e-81 Identity = 154/215 (71.63%), Postives = 166/215 (77.21%), Query Frame = 3 Query: 21 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVPRWHLQPPKLAPPDEAKENEPCQSEIGNL 656 MATVTT ASA++FRPC SK RFLTGSSG+LNR+++ + SSA SFKVEAKKGEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNP P F + P EVG P P AP EAKE E + L Sbjct: 1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-KQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAML 214
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 300.827 bits (769), Expect = 1.109e-80 Identity = 157/214 (73.36%), Postives = 164/214 (76.64%), Query Frame = 3 Query: 21 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVPRWHLQPPKLAPPDEAKENEPCQSEIGNL 656 MATVTTQASAA+F PC KSRFL GSSGKLNR VA +PV S SASFKVEAKKGEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNP P F + P EVG P P AP EAKE E + L Sbjct: 1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF-KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAML 213
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 9.177e-43 Identity = 100/201 (49.75%), Postives = 119/201 (59.20%), Query Frame = 3 Query: 57 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVPRWHLQPPKLAPPDEAKENEPCQSEIGNL 656 FR S +GS R+VA++ KG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W GK YFASSST + + YVEIRRWQDIKNP P F S + PP+E G P P AP E KE E + L Sbjct: 7 FRTRVPPSPAASGSPRSTRRDVAVQA------------KGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIF-KSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAML 192
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.980e-37 Identity = 80/172 (46.51%), Postives = 106/172 (61.63%), Query Frame = 3 Query: 69 ASKSRFLTGSSGKLNREVALKPVSSSA----SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVP 572 A+K+ FL G ++++ +A PV S + + + + W PG P +L+GSLPGD GFDPLGL DPE+LKW QAELV+SRWAMLG G+ +PE TKIG++N P WY AG+ EYF ++TLFVIE +L + E RRW DI P C P + +VG P Sbjct: 29 ATKASFLGGKRLRVSKFIA--PVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKP-GCVNTDPIFPNNKLTGTDVGYP 197
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 4.877e-36 Identity = 76/169 (44.97%), Postives = 102/169 (60.36%), Query Frame = 3 Query: 72 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGE--WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVP 572 +K+ FL G ++++ S+ + V A W PG P +L+GSLPGD GFDPLGLA DPE+L+W QAELV+ RWAMLG G+ +PE+ TKIGI+N P WY AG+ EYF ++TLF++E +L + E RRW DI P C P + +VG P Sbjct: 30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKP-GCVNTDPIFPNNKLTGTDVGYP 197
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 3.511e-18 Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 3 Query: 165 AKKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503 A K W+P + P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML V+G+ + + +T I W++AG A S TL + +L +VE +RW D +P Sbjct: 55 APKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDP 170
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 4.586e-18 Identity = 64/171 (37.43%), Postives = 90/171 (52.63%), Query Frame = 3 Query: 45 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS-------FKV--EAKKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503 SAAV +S FLTG G ++ + P+++ F V A K W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG A S TL + IL +VE +RW D +P Sbjct: 5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDP 165
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 4.586e-18 Identity = 63/180 (35.00%), Postives = 93/180 (51.67%), Query Frame = 3 Query: 15 LNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503 ++ ++++T A AA + S+ +T + + R + PV A+ ++ W S +YL+G LPGD GFDPLGL+ DPE KW E++N R+AMLG G + PE+ K G+I PQ W+ AG Y+A + TLFV+E L + E RR+QD P Sbjct: 7 ISSSSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL------WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 177
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.334e-17 Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 3 Query: 180 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503 W S +YL+GSLPGD GFDPLGL+ DPE +W E++N R+AMLG VG + PE K+G+I PQ W+ AG Y+A + TLFV+E L + E RR+QD P Sbjct: 58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 179
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 3.882e-17 Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = 3 Query: 30 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSSASFKVEAK----KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQD 491 +TT ++ AV +S FLTG + L V + V++ F V A K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG A S +L + +L +VE +RW D Sbjct: 1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTAR-VTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 161 The following BLAST results are available for this feature:
BLAST of DY260306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260306 ID=DY260306; Name=DY260306; organism=Citrus clementina; type=EST; length=1268bpback to top |