DY260306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.093e-17 Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3 Query: 177 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPRK 509 EW PG P +L+GS PGD GFDPLGLA PEN + + ++E+ + RWAML V G+L+PE + +W G+A Y + + T+ IEF+ + E +R + K+P K Sbjct: 47 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK 164 HSP 2 Score: 26.9498 bits (58), Expect = 4.093e-17 Identity = 16/57 (28.07%), Postives = 24/57 (42.11%), Query Frame = 1 Query: 559 KLGYPGGIFNPPNLHP----LMKQRRTNLANRKLAIFGIPGNYLFHHNVPSTGPIRN 717 K YPGG F+P + + + N +LA+ G + P TGP+ N Sbjct: 164 KKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLEN 220
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 6.622e-17 Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 3 Query: 177 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPF 530 +W+PG P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE + +W G+A Y + + T+ IEF+ +VE +R + + +K P F Sbjct: 48 DWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF 173
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.292e-12 Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 3 Query: 96 SSGKLNREVALKPVSSSASFKVEAKKGEWLPGL---ASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 404 ++GK A P SS F + +WL A+P YL G PGD G+D GL+ DPE K Y + EL+++RWAMLG +G PE+ K G W+ AG Sbjct: 17 ATGKKTAAKAAAPKSSGVEF-YGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAG 122
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 6.414e-12 Identity = 51/145 (35.17%), Postives = 74/145 (51.03%), Query Frame = 3 Query: 21 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP--VSSSASFKVEAKKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 MA T S+ V R S S L G + R+ A KP +SS S A + +L L+ P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ G+A +F + S +F Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 138
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 1.094e-11 Identity = 45/144 (31.25%), Postives = 71/144 (49.31%), Query Frame = 3 Query: 21 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 MAT T Q SA + +P R + G+ G+++ +K S + + K +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+ G+A +F + S +F Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGV-------KFGEAVWFKAGSQIF 137
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11 Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 3 Query: 201 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ--WYDAG 404 P YLNG + GD G+DP GL + PEN Y EL+++RWAMLG G ++PE K G P+ W+ G Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTG 151
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.429e-11 Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 9 SSLNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 S++ +++ A P AS+ + GS R+ KP S S + + ++L + SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ G+A +F + S +F Sbjct: 4 STMALSSPAFAGKAVKLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 139
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.866e-11 Identity = 38/102 (37.25%), Postives = 59/102 (57.84%), Query Frame = 3 Query: 171 KGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVF-TKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFH 464 + +WL ++ P YL G PGD G+D GL+ DPE K Y + E++++RWA+LG +G+L PE+ T G+ P W+ AG A+ F+ ++ L H Sbjct: 44 RAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAG-AQIFSEGGLDYLGSPALIH 144
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.866e-11 Identity = 45/146 (30.82%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 9 SSLNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 S++ +++ A P AS+ + GS R+ KP S S + + ++L + SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ + G+ G+A +F + S +F Sbjct: 4 STMALSSPAFAGKAVNLSPAASE---VLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 139
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11 Identity = 41/123 (33.33%), Postives = 67/123 (54.47%), Query Frame = 3 Query: 78 SRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 S+ L G+ + + K V+SS S + ++L + SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ G+A +F + S +F Sbjct: 26 SQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-------KFGEAVWFKAGSQIF 141 The following BLAST results are available for this feature:
BLAST of DY260306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260306 ID=DY260306; Name=DY260306; organism=Citrus clementina; type=EST; length=1268bpback to top |