DY260306

Overview
NameDY260306
Unique NameDY260306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1476 contig Ccv1_Contig1476:1..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 3
Query:   48 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLP----------GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAG 404
            AA  R   +K+ FL+G  G+      L+ ++++ + ++      W               +P+YLNG  PGD G+D  GL+ DPE        E+++ RWAMLG +G + PEV  K +G+    P W+ AG
Sbjct:    7 AAASRAVVAKTPFLSGQ-GRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAG 136          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.430e-11
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  198 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFASSSTLFVIEFILFH 464
            +P YL G  PGD G+D  GL+ DP+    Y + EL+++RWA+LG +G+L PE+ ++   +    P W+ AG A+ FA     ++    L H
Sbjct:   50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIH 139          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.092e-11
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   21 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            MA  T   S+  F   A K    +  +TG+     R+   KPV+SS+ +     + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F + S +F
Sbjct:    1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPW-YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 138          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.092e-11
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 3
Query:    9 SSLNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            SS+ +++ T         P    S+ L  +   + +    K V+SS S      + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+         G+A +F + S +F
Sbjct:    7 SSMALSSPTLAGKQLKLNP---SSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-------KFGEAVWFKAGSQIF 142          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.262e-11
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 3
Query:   21 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440
            MA  T   S++ F   A K    S  +TG+     R+ A   KPVSSS+ +     + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+         G+A +F   S +F
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPW-YGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKGGSQIF 140          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.262e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 3
Query:   96 SSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 404
            S G+ +    +K V  S  +  +  K        +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG
Sbjct:   30 SDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG 133          
The following BLAST results are available for this feature:
BLAST of DY260306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CB23_HORVU2.437e-1132.06Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE5.430e-1137.36Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_TOBAC7.092e-1132.19Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PEA7.092e-1130.14Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_NICPL9.262e-1133.78Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_LEMGI9.262e-1134.62Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260306 ID=DY260306; Name=DY260306; organism=Citrus clementina; type=EST; length=1268bp
CATAACTCTCGTCCTTAAACATGGCAACCGTCACAACACAAGCCTCGGCC
GCCGTGTTCCGGCCATGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTC
GGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTT
CTTTCAAAGTTGAAGCCAAGAAGGGGGAGTGGTTACCGGGCTTGGCCTCA
CCAACTTACCTCAACGGCAGCCTCCCCGGTGACAATGGATTTGACCCCTT
GGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTATGTGCAAGCCGAGC
TTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTGGAATGTTGTTGCCC
GAAGTTTTCACAAAGATTGGAATTATTAATGTTCCTCAATGGTATGATGC
TGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCGTGATCGAGT
TCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGACATAAAGAAC
CCCAGGAAGTGTCAACCAAGACCCCCATTTTCAAGCAGTACAGCTTGCCC
TCCAAACGAAGTTGGGGTACCCCGGTGGCATCTTCAACCCCCCAAACTTG
CACCCCCTGATGAAGCAAAGGAGAACGAACCTTGCCAATCGGAAATTGGC
AATCTTCGGCATTCCTGGGAATTATCTGTTCCACCACAATGTCCCCAGCA
CAGGGCCCATTAGAAACACCTCCTGAAACACATCATTGAAACCCCAGGGC
CCACTCCCCATCGTCCCAACACTAAGTGCGTTATTTCACCCCCAAAACAG
ACCTAGTTCACTTCGAGATCTTCTGTCTTCTCTTTATGAAAACCCCACAT
CTCCTACAACTTTCCGATCTCAACTCCCACCACACTCTCACCCCCCTCAC
TCACCACTCTCATCCTCTCAACCCCCCAACCCTCCTAAGACTACCTCCAC
TTAGCCATATTATACCAACTCAATAAATACACAACTATACACTACACCCC
TACCCCTATCTCACCCAAACCATCCAACCTACCAAACAAGACATCATTCC
CACCCCCCAACACAACTTTTCTATTGTCTCTACAACACTCTCCCTAAGCC
TACCCTCATATCCTAACATCAGTCTATCAATTCACCACTCACACCTCTCA
CAACCCACACTCATACCCACTACCACTACAAAAACATCCCGAACAATCCA
CCTTACCAACACTATTCAATCTCTCATCCTAATAACTCCAAATTAACATT
TACTCTGCATCCCTCCCG
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