DY260306
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.437e-11 Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 3 Query: 48 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLP----------GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAG 404 AA R +K+ FL+G G+ L+ ++++ + ++ W +P+YLNG PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +G+ P W+ AG Sbjct: 7 AAASRAVVAKTPFLSGQ-GRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAG 136
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.430e-11 Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 3 Query: 198 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFASSSTLFVIEFILFH 464 +P YL G PGD G+D GL+ DP+ Y + EL+++RWA+LG +G+L PE+ ++ + P W+ AG A+ FA ++ L H Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIH 139
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 7.092e-11 Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 3 Query: 21 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 MA T S+ F A K + +TG+ R+ KPV+SS+ + + ++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ G+A +F + S +F Sbjct: 1 MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPW-YGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKAGSQIF 138
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 7.092e-11 Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 3 Query: 9 SSLNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 SS+ +++ T P S+ L + + + K V+SS S + ++L + SP+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ ++ G+ G+A +F + S +F Sbjct: 7 SSMALSSPTLAGKQLKLNP---SSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGV-------KFGEAVWFKAGSQIF 142
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.262e-11 Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 3 Query: 21 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLF 440 MA T S++ F A K S +TG+ R+ A KPVSSS+ + + ++L + SP+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ + G+ G+A +F S +F Sbjct: 1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPW-YGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV-------KFGEAVWFKGGSQIF 140
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.262e-11 Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = 3 Query: 96 SSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAG 404 S G+ + +K V S + + K +P+YL G PGD G+D GL+ DPE + E+++SRWAMLG +G + PE+ +K G+ W+ AG Sbjct: 30 SDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAG 133 The following BLAST results are available for this feature:
BLAST of DY260306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260306 ID=DY260306; Name=DY260306; organism=Citrus clementina; type=EST; length=1268bpback to top |