DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CARHZ (Ribonuclease 3 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rnc PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.649e-13
Identity = 70/250 (28.00%), Postives = 115/250 (46.00%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVTLEELQQQPQ-PVTLLFKLCQKNGK-----QVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845
            +E I+ +NF N  +L  A+TH SY            +RLEF+GDA L L +S+Y+F  +PQ   G L+ LR+  +  E L  +A K    KF+R           EF    +Q  +             LA+ VE++  A+Y D  I+     +  ++   L+P    E L+Q P+   T L +L QK        ++ ++    ++K   A V ++   +A+   + K+ A+  AA++AL  L     V
Sbjct:    9 LEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKFLRLGKG-------EFKAGGNQRMSN------------LANAVEAVIGAVYFDCGIEAAFSFITRLYGEKLKP----ENLEQLPKDEKTTLQELLQKEKNNVLRYEILLEEGPPHQKIFTAGVIINDKLIATGRGKSKKEAEQEAAKKALELLKNEKEV 235          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRGC (Ribonuclease 3 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rnc PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.766e-13
Identity = 68/232 (29.31%), Postives = 106/232 (45.69%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK-----QVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            FK+  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G L+ LR+  +  E LA      GF +         D +   F +    E+ +    G  +   +L D+ E+   A+ +D   ++ K ++    ++ P V   + +Q     T L +L Q NG      QV  +    + KN   SV VDG  V       K++A+  AA+ A  K
Sbjct:   16 FKDVSLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLIISEYLFEKYPKRPEGDLTKLRSTIVREESLA------GFSR---------DCQFDRFIKLGKGEEKS----GGRERETILGDLFEAFLGALLLDKGLEVVKNFIY--QVMIPKVEAGDFEQVTDYKTKLQELLQSNGDVEILYQVVSESGPAHAKNFEVSVSVDGRLVGKGQGRSKKLAEQEAAKNAFEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_OCEIH (Ribonuclease 3 OS=Oceanobacillus iheyensis GN=rnc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.224e-13
Identity = 66/249 (26.51%), Postives = 109/249 (43.78%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD----------LQKLWM-IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  +  +F+ K LL+EA THSSY +       +  +RLEF+GDA L LA+S Y++     +  G+++ LRAA +    L   A +  F KF+R                   E  T    G  + P +LAD  E+   A+Y+D  FD            KL    F   ++    L+E  QQ +   + +++ ++ G          N++ +A V +        +   K+ A+  AA+ AL  +  S
Sbjct:    6 LEEHLGISFQQKALLKEAFTHSSYVNEHRKQRLSDNERLEFLGDAVLELAVSQYLYRNNKDMPEGEMTKLRAAIVCEPSLKNFAEELEFGKFLRLGKG---------------EQQT----GGRERPAILADAFEAFLGALYLDQGFDNVLDFLNIHVFPKLTTGAFSHAMDYKSQLQEFVQQHKDQKIEYRIIEEKGPS-------HNKEFVAEVVIQEKAAGIGTGRTKKEAEQRAAKNALDSINNS 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOPE (Ribonuclease 3 OS=Clostridium perfringens GN=rnc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.224e-13
Identity = 61/247 (24.70%), Postives = 113/247 (45.75%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            VE +I   F+NK +L  ALTHSSY     D    +RLEF+GD+ L L ++ Y+F  Y     G+L+ +RA  +    L +V+      K++R S      K +E               G  +   + AD +E++ AA+Y+D   ++   +++  F+ +++  +           L+E+ Q+   V +++ L +  G           RK    + ++   +       K+ ++ NAA+ AL +L +
Sbjct:    9 VEKLIGIEFENKGVLITALTHSSYANQFKDVKYNERLEFLGDSVLQLCVTKYLFNNYKDKSEGELTKIRALVVCENSLHKVSKNLSLGKYIRMS------KGEELT-------------GGRERTSIQADALEAVIAAVYLDKGIEVANDFILRNFKDVIDKAINEEIILDFKTRLQEVLQKNGEVNIVYNLVKHEGPP-------HRRKFFTDLLINNEIMGQGVGFSKKESEQNAAKAALQRLGE 229          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRAP2 (Ribonuclease 3 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rnc PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 8.129e-13
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  150 IINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            I+ Y+FKN  LL  ALTH S T   +Y+RLEF+GD+ LG  ++  +++ +P L  G+LS +R+  +    LA +               AL+ K+ E+    + E       G  K  K+L D+ E+I  AIY+D DF
Sbjct:   11 ILGYSFKNYTLLVRALTHRSKTKK-NYERLEFLGDSILGFVIAEVLYMEFPDLAEGKLSQIRSKLVKGVTLANL---------------ALNFKLDEYIILGASEQ------GGHKREKILEDVFEAIIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOB8 (Ribonuclease 3 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rnc PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 8.129e-13
Identity = 64/242 (26.45%), Postives = 109/242 (45.04%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            +E  +   F N  LL+ ALTHSS+     D+   +RLEF+GD+ L L ++ Y+F  Y     G+L+ +R+  +    L  +A K     ++R S     +++    E +S                + AD VE+I AA+Y+D  I F    + + F  ++   +           L+EL Q+   V + ++L +  G           RK   +V +D   +   S   K+ A+ NAA++AL
Sbjct:    9 IEENLGVFFNNHTLLKTALTHSSFGNQFKDAEYNERLEFLGDSVLQLCITEYLFNNYKHKTEGELTKIRSLIVCENSLYEIAKKINLGSYIRMSKG---EEITGGRERIS----------------IQADAVEAIIAAVYLDKGIGFVRDFILLHFEEIINKAINNEIVLDFKTKLQELLQKDGEVVIQYELTKFEGPP-------HRRKFFTNVVIDKKLMGEGSGYSKKEAEQNAAKQAL 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PEDPA (Ribonuclease 3 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rnc PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.062e-12
Identity = 64/239 (26.78%), Postives = 111/239 (46.44%), Query Frame = 3
Query:  162 NFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPIV----TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            +F N  LL+EA T +SY +         Y+R+EF+GDA L L +S Y+F  YP++  G+L+ LRAA +     +  A +  F +++R      ++K                  G+ +   +L DI ES   A+Y+D      + ++       +  G  + I+     L+EL Q+   V + ++L  + G + D+           SV  D   +A+ +   K++A+ NAA +AL  L
Sbjct:   16 HFNNHALLDEAFTQASYVNEHPHQELKFYERIEFLGDAVLQLIVSEYLFKRYPEMPQGKLTRLRAAMVCEASFSDFAKECHFDQYIRLGKG--EEK-----------------SGARQRSSLLCDIFESFIGALYLDQGRAAVERFVRIVIFPKLDEGKFDHIIDHKSELQELLQKNGDVEIDYELVSEEGPENDLIF-------TVSVTADHKKLATGTGHSKKVAEQNAANQALQLL 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACJO (Ribonuclease 3 OS=Lactobacillus johnsonii GN=rnc PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.062e-12
Identity = 56/227 (24.67%), Postives = 108/227 (47.58%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIY---VDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            F N++LLE+A THSSY +       Y++LEF+GDA L LA+S+Y++  +P+L+ G+L+ +R+  + TE  +  A++ GF + +       ++K          ED    + G++   + +  +   +   +Y    + DF+  + +            L+E  Q   PV + +++  ++  +   K           + V+G  V+      K+ A+  AA+ AL K
Sbjct:   18 FNNEKLLEDAFTHSSYANEHPGRKDYEKLEFLGDAVLELAVSDYLYRHFPRLNEGELTRMRSNIVRTEGFSEFAIECGFPEEINLGKG--EEKAGARKRKTLLEDVFEAFNGALFLDQGMPAVQHFLHLTVYPLIAEGDFNASRDYK---------TELQERLQVNGPVKIEYQVISEDESKPSFK---------VQLLVNGEKVSEGQGRNKKAAEQQAAQAALDK 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_GEOSW (Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) GN=rnc PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.062e-12
Identity = 63/238 (26.47%), Postives = 107/238 (44.96%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            F N++LL +A THSSY +          +RLEF+GDA L L +S Y+F  +P +  G+L+ LRAA +    L + A                      F E V       + GG  + P +LAD+ E+   A+Y+D   D    ++            F  +++    L+EL Q+     L + + ++ G          N++ ++ V ++G  +     + K+ A+ +AA+ AL KL
Sbjct:   29 FTNEKLLIQAFTHSSYVNEHRRRPHEDNERLEFLGDAVLELTVSQYLFKKFPHMSEGELTKLRAAIVCEPSLVKFA------------------NALSFGELVLLGKGEELTGGRTR-PALLADVFEAFIGALYLDQGMDAVMQFLGQTIFPKIDEGAFSHVMDFKSQLQELVQRDGIGVLEYSILEEKGP-------AHNKEFVSRVSLNGQELGIGVGKSKKEAEQHAAQMALQKL 240          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_THIDA (Ribonuclease 3 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rnc PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.387e-12
Identity = 52/179 (29.05%), Postives = 88/179 (49.16%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQ 674
            ++  + Y F    LL++ALTH SY  + + +RLEF+GD+ L  +++  ++ A+P L  G LS LRA  +  E LA +A            A  L D ++             +  G  + P +LAD +ES+  A+++D  FD  +   + R L +P+V  ++       P T L ++ Q
Sbjct:   10 LQQALGYTFSRSGLLQQALTHRSY-GALNNERLEFLGDSVLNCSVARALYDAFPDLPEGSLSRLRANLVRQETLAEIA-----------GALRLGDSLR--------LGEGELKSGGFRRPSILADALESLFGAVFLDAGFD--EAQRVVRRLFDPLVAQIDPKASGKDPKTRLQEILQ 166          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_CARHZ3.649e-1328.00Ribonuclease 3 OS=Carboxydothermus hydrogenoforman... [more]
RNC_STRGC4.766e-1329.31Ribonuclease 3 OS=Streptococcus gordonii (strain C... [more]
RNC_OCEIH6.224e-1326.51Ribonuclease 3 OS=Oceanobacillus iheyensis GN=rnc ... [more]
RNC_CLOPE6.224e-1324.70Ribonuclease 3 OS=Clostridium perfringens GN=rnc P... [more]
RNC_FRAP28.129e-1334.78Ribonuclease 3 OS=Francisella philomiragia subsp. ... [more]
RNC_CLOB88.129e-1326.45Ribonuclease 3 OS=Clostridium beijerinckii (strain... [more]
RNC_PEDPA1.062e-1226.78Ribonuclease 3 OS=Pediococcus pentosaceus (strain ... [more]
RNC_LACJO1.062e-1224.67Ribonuclease 3 OS=Lactobacillus johnsonii GN=rnc P... [more]
RNC_GEOSW1.062e-1226.47Ribonuclease 3 OS=Geobacillus sp. (strain WCH70) G... [more]
RNC_THIDA1.387e-1229.05Ribonuclease 3 OS=Thiobacillus denitrificans (stra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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