DY262448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RTL2_ORYSJ (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica GN=Os05g0271300 PE=2 SV=2) HSP 1 Score: 259.996 bits (663), Expect = 2.327e-68 Identity = 149/290 (51.38%), Postives = 188/290 (64.83%), Query Frame = 3 Query: 105 LPSP----EMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD-STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQED----NTAVYGGS-IKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPVNCDVCEIFDDIDEKFEIEAAKQKLHELXRKEKW 944 LP P + +A VE ++ Y F++ RLLEEALTH S+ D + SYQRLEF+GD+ALGLA SN+++L P L PG LS LRAANISTEKLARVAV+H Y +R + LD V +F E V QE +T YGGS +KAPKVLADIVE+IAAA+YVD FDL+KLW + R L EPI+T E + + QPVT+L +LCQK+GK K W+K + +V+V G V SSEQK IAKLNAAR+A KLA + DE E+ KQKL+E ++ W Sbjct: 24 LPPPGFVADRAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVSYQRLEFVGDSALGLAFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLLVGQFIETVKQEPEDDLSTVPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDE--QPVTMLHELCQKHGKMAQFKTWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLAGAKKQVLTTGVGNGLGDEIGELRECKQKLNEQCSRQNW 311
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RTL3_ORYSJ (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica GN=Os06g0358800 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 8.605e-47 Identity = 111/260 (42.69%), Postives = 161/260 (61.92%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI--KHWRKNRKNIASVYVDGSFVASAS-SEQKEIAKLNAAREALXKL------AQSMPVNCDVCEIFDDID 881 VE+++ Y F++K L+EEALTH S Y +Y+RLE++GDA L +S VFL Y QL PG L+ LRAAN+ EKLARVAV HG + F+RH A LD ++ +F E +S + G + PKVL D+VES+ AIY D +F+ + +W +F+ L +P+++LE L + PV+ LF+ CQK + V I W KN V +DG V A+ +++KEIA+ AA+ AL KL +Q+ P++ +V E F+ ID Sbjct: 42 VESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQPGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHS--NGLLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGK--HPVSELFEFCQKTRRGVKIVKDEWDKNL--TVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKLKETLGQSQTEPMSAEVSEQFNKID 295
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 6.381e-42 Identity = 107/299 (35.79%), Postives = 164/299 (54.85%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL-----XKLAQSMPVNCDVCEIFDDIDEKFEIEA-------AKQKLHELXRKEKWAQTSLQIEKDXGP 983 +E + Y FK K LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L PG+L+ LRAA ++ E ARVAVKH + ++RH ++AL+ +++EF + V E + + G KAPKVL DIVESIA AI++D D W +F+ LL+P+VT E L PV L + CQ+ + ++ K R V++DG V A + QK++A+ AAR AL ++A+S + + +D E +Q L+++ ++ W S + K+ GP Sbjct: 1562 LERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPM--HPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGP 1858
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 5.402e-41 Identity = 106/302 (35.10%), Postives = 166/302 (54.97%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG----GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPVNCDVCEIFDDIDEKFEIEA-AKQKLHELXRKEKWAQTSLQIEKDXGPHMIRNYVCSSNAPT 1025 ++ ++ F+NK LL EA+TH+S S + YQRLEF+GDA L ++ ++F Y L PG+L+ LRAA ++ E ARVAVKH + +RH ++AL+ +++EF + V +E + G KAPKVL DIVESIA AI++D +D +W +F+ LL P+VT E L PV L + CQ+ + ++ K R V+VDG + A + QK++A+ AAR AL L + E D ++K + +Q L+++ + +W + + GP + +V S T Sbjct: 1541 LKGVLGIEFQNKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPM--HPVRELQERCQQQAEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKKEDE--RDGEKKNGAQMFTRQTLNDICLRRQWPMPQYRCVNEGGPAHAKRFVYSVRVNT 1838
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 3.510e-32 Identity = 101/278 (36.33%), Postives = 153/278 (55.04%), Query Frame = 3 Query: 78 LLKEAMLTSLPSPEMEDAVF-YVENIINYNFKNKRLLEEALTHSSYTDSTS---YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFA---EAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREALXKLAQS---MPVNCDVCEIFD 872 +L ++ T LP +D VF +E + Y+F K LL EALTH S + + Y+RLEF+GDA L + L+ Y+F ++ + G+L+ LR+A+++ E A+VAVKH F+ F++HS+ L D++ E+ E S + + G K PKVL DIVESIA AI +D DL +W IF LL PIVT E L+ P L + C K+G V I + +A++ V + V S++++ AK +A+ L L + +P N E F+ Sbjct: 1226 ILSASVQTYLP----KDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLEL--PPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQLKEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFE 1497
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 4.744e-29 Identity = 85/266 (31.95%), Postives = 141/266 (53.01%), Query Frame = 3 Query: 69 DYRLLKEAMLTS--LPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTD---STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEA---VSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV---DGSFVASASSEQKEIAKLNAAREALXKLAQ 833 D +LL+E + L S + + +E + YNF K LL EA+TH S + YQRLEF+GD+ L L L+ +++ + +DPG+L+ LR+A +S E A+ V++ + ++H + L +++ E+ + +++ + + K PKVL DI+ESIA A+++D DF++ +W IF LL P++T ++L P L +LC G ++ K K + I + + D VA K+ AK AA L L Q Sbjct: 1218 DMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLAL--PPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDELLVAQGHDRNKKRAKAKAASRILADLKQ 1481
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RTL1_ORYSJ (Ribonuclease 3-like protein 1 OS=Oryza sativa subsp. japonica GN=Os01g0551100 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 8.091e-29 Identity = 89/232 (38.36%), Postives = 137/232 (59.05%), Query Frame = 3 Query: 159 YNFKN--KRLLEEALTHSSYTDSTS-----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFV-RHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIK--HWRKNRKNIASVYVDGSFVASASS-----EQKEIAKLNAAR 809 Y+F++ LLE+ALTHS + + +QRLEF+GDAALGLA + + P LD G L++LR+AN+ST+KLARVAV+ Y + R++ A D +V F ++V + G I+ P+VLADIVE+I A+Y+D DL+ L + + L EPI+T + L + P+ ++L +L ++ + ++IK WRK +A+V DG A +S + E+ KL R Sbjct: 31 YSFRDGGALLLEDALTHSVHPRDEAGGRARHQRLEFLGDAALGLAFATIFYRDDPGLDQGDLTVLRSANVSTQKLARVAVRRRLYPLLRRYNCAPQDHEVSRFTKSVEGPYS----GDPIEGPRVLADIVEAIVGAVYLDSKLDLEVLQKVAKLLCEPIITKKALLEDPE--SMLNELGGEHREDLEIKILAWRK----VANVVDDGREQAITTSGLGNGSEDEVGKLRTIR 252
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL2A_ORYSJ (Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica GN=DCL2A PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 3.075e-28 Identity = 83/239 (34.73%), Postives = 125/239 (52.30%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYV-----DGSFVASASSEQKEIAKLNAAREALXKL 827 +E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP P L+ LR+A+++ A AVK G K + HS++ L K+ + E Q YG I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L + C + + I + + + ++SV + ++ A+ S K +AK A++ L L Sbjct: 1164 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYYLEEFGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQEFCDR--RSFKITYEKNHVDGVSSVIARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL2B_ORYSJ (Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica GN=DCL2B PE=2 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 6.411e-26 Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS---TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYG--GSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKN-----IASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 +E ++ Y F + LL EALTH SY S + YQRLEF+GDA L + Y + YP P L+ LR+A+++ A AVK G K + HS++ L K+ + + Q YG I PKVL D++ESIA AIY+D D + +W + LLEP+ T E + +P PV L + C + ++ + KN + IA V + ++ S ++AK A++ L L Sbjct: 1135 LEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYY---LGQSFTGPSYGWEAGIGLPKVLGDVIESIAGAIYLDSKCDKEVVWRSMKRLLEPLATPETI--EPDPVKGLQEFCDRRSFKIT---YEKNHVDGVSSVIARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1365
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.579e-24 Identity = 73/239 (30.54%), Postives = 123/239 (51.46%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG--------KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 +E +I Y FK+K LL +A H S++ + YQRLEF+GDA L +++Y++ YP + PGQ++ LR+ + + LA AV+ +K + + L + +F V ++ PK L DIVES A+ +D F+L +W + LL+P++T + P+ L +LCQ +G + D ++ K NI S + + +A++ + A+ AA+E L KL Sbjct: 1217 LEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANM--HTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKII----ICTAANRNSKAARKFAAQETLSKL 1449 The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 214
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bpback to top |