DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NATTJ (Ribonuclease 3 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rnc PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.387e-12
Identity = 64/239 (26.78%), Postives = 110/239 (46.03%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDSTS-----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK--LWMIFRGLLEPI---------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            + + +LL +A+TH+SY           +RLEF+GDA L LA+S  ++  YP+L  G+L+ LRA  +    L ++A K    K++R                   ED+T    G       LAD VE++  A+Y+  ++D  K  +  +F+  L  I           ++EL Q        +++ +++G   D       +  +A V ++   V   S + K+ A+ NAA  A  KL++
Sbjct:   18 YVDDKLLLQAVTHTSYAHEQKDVVDHNERLEFLGDAVLELAISETLYKKYPELPEGELTKLRAELVCELSLVKIAEKLDLGKYLRLGKG---------------EDST----GGRDRRSTLADTVEALIGAVYLQTNYDQTKQLILDLFKDQLSHIDNQRIGDYKTMIQELVQDRYGDPPKYQIVKESGPDHD-------KSFVAEVQINNEVVGRGSGKSKKEAEQNAAHFAFQKLSK 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOBB (Ribonuclease 3 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rnc PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.387e-12
Identity = 62/248 (25.00%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +EN +   F N  L++ ALTHSS+     D+   +RLEF+GD+ L L ++ Y+F  +     G+L+ +R+  +    L  +A K    +++R S      K +E               G  +   + AD VE++ AA+Y+D  I F    + + F  ++   +           L+EL Q+   + + ++L +  G           RK   +V ++   +       K+ A+ NAA+EAL +L ++
Sbjct:    9 IENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEYLFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMS------KGEELT-------------GGRERMSIQADAVEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYELVKYEGPP-------HRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRLEKN 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOBA (Ribonuclease 3 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rnc PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.387e-12
Identity = 62/248 (25.00%), Postives = 113/248 (45.56%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSY----TDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +EN +   F N  L++ ALTHSS+     D+   +RLEF+GD+ L L ++ Y+F  +     G+L+ +R+  +    L  +A K    +++R S      K +E               G  +   + AD VE++ AA+Y+D  I F    + + F  ++   +           L+EL Q+   + + ++L +  G           RK   +V ++   +       K+ A+ NAA+EAL +L ++
Sbjct:    9 IENRLGVYFNNPSLIKTALTHSSFGNQFKDAKYNERLEFLGDSVLQLCITEYLFNKFKDKSEGELTKIRSLIVCENSLYEIAKKLSLGEYIRMS------KGEELT-------------GGRERMSIQADAVEAVIAAVYLDKGIGFVNDFILLHFEEMINKAINNEIVLDFKTKLQELLQKDGEILIQYELLKYEGPP-------HRRKFFTNVIINEKVMGIGEGYSKKEAEQNAAKEALKRLEKN 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMC5 (Ribonuclease 3 OS=Campylobacter curvus (strain 525.92) GN=rnc PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.387e-12
Identity = 67/241 (27.80%), Postives = 114/241 (47.30%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI-----------FRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++ ++ Y F+N +LL EALTH S     S +RLEF+GDA + L +  Y+F  + + + G +S LRAA ++ +  A +A         RH       ++ EF    + E N    GG  KA  +L+D  E++  A+Y++   D  +   +           F  L++   T L+E+ Q     T +++L +  G         K    IA +  D     + ++ +KE A+  AA+ AL K+
Sbjct:    7 LQKLLGYEFENTKLLNEALTHKSTKLPYSNERLEFLGDAVMDLIVGEYLFKKFSKTNEGDMSKLRAALVNEKSFANMA---------RHL------QIGEFIHLSTAEANN---GGREKA-SLLSDAFEAVMGAVYLEAGLDKVREIAVRLLEICYPKIDFSHLVKDYKTALQEITQASLGTTPIYELVRSFGPD------HKKEFEIALLLNDKEISRAIANSKKE-AQQMAAKIALEKM 221          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRR6 (Ribonuclease 3 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.365e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP4 (Ribonuclease 3 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.365e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP2 (Ribonuclease 3 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.365e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFEIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACLS (Ribonuclease 3 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.365e-12
Identity = 56/226 (24.78%), Postives = 112/226 (49.56%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR--HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            F ++ LL+ A THSS+T+        + +RLEF+GD AL L +S+Y++  YP+   G+LS +R++ + TE LA  +   GF +F+R  H    +  + +E     + E+    + G++   + + ++ + I   +   +  D       +  +++    L+E+ Q     T+ + + ++ G   D       R  +A+VY +G  +     + K++A+  AA  A+
Sbjct:   16 FNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE----TTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKND------DYVKVIDYKTELQEVLQVGGETTITYNILKEEGPAHD-------RSFVAAVYNNGKELGRGLGKSKKVAEQKAAENAI 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMC1 (Ribonuclease 3 OS=Campylobacter concisus (strain 13826) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.365e-12
Identity = 68/242 (28.10%), Postives = 111/242 (45.87%), Query Frame = 3
Query:  144 ENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI--------------VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            E  + Y FK   LLEEALTH S   + + +RLEF+GDA + L ++ Y+F  + ++  G +S LRAA ++ +  A +A +    +F+R S A              +E+N     G  +   +L+D  E++  AIY  ++  L K+  I   LLE                  L+E+ Q    V   ++L    G         K    IA + ++G  ++ A    K+ A+  AA+ AL K+
Sbjct:    8 ERNLGYKFKKSELLEEALTHKSTKQALNNERLEFLGDAVMDLLVAEYLFKKFSKIAEGDMSKLRAALVNEKSFANMARRLKMGEFLRLSQA--------------EENN-----GGREKDSILSDAFEAVMGAIY--LEAGLLKVREISISLLELCYPQIDFAHLEKDYKTALQEVTQATLGVIPTYELIGSFGPD------HKKEFEIA-LLLNGKEISRAVGSSKKQAQQLAAKIALEKI 221          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SYMTH (Ribonuclease 3 OS=Symbiobacterium thermophilum GN=rnc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.089e-12
Identity = 64/238 (26.89%), Postives = 114/238 (47.90%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTD----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD------IDFDLQKLWMIFRGLLEPIVTLE---ELQQQPQ---PVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            + Y F+++ LL EALTH++Y +    + + +RLEF+GD+ LG+ ++ +++  YP L  G+L+ +RAA +    LA  A   G  + +R              EAVS  D  +           L+D  E++  A+Y+D        F L++L  +     + +V ++   +LQ+Q Q        ++L  + G      H R+ +     VY +G  + +     K+ A+  AAR+AL
Sbjct:   18 LGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPEGELTKIRAAVVCEPSLAERARVLGIGRHMRFGR----------GEAVSGRDRDS----------TLSDAFEAVVGALYLDGGLEAAQRFVLRELGQLVEAARQGLVRVDYKTQLQEQLQRQGAAAPQYRLLVEEGP----AHLRRFQ---VGVYFEGRLLGTGWGRNKKEAEQEAARQAL 228          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_NATTJ1.387e-1226.78Ribonuclease 3 OS=Natranaerobius thermophilus (str... [more]
RNC_CLOBB1.387e-1225.00Ribonuclease 3 OS=Clostridium botulinum (strain Ek... [more]
RNC_CLOBA1.387e-1225.00Ribonuclease 3 OS=Clostridium botulinum (strain Al... [more]
RNC_CAMC51.387e-1227.80Ribonuclease 3 OS=Campylobacter curvus (strain 525... [more]
RNC_STRR62.365e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_STRP42.365e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae serotyp... [more]
RNC_STRP22.365e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae serotyp... [more]
RNC_LACLS2.365e-1224.78Ribonuclease 3 OS=Lactococcus lactis subsp. cremor... [more]
RNC_CAMC12.365e-1228.10Ribonuclease 3 OS=Campylobacter concisus (strain 1... [more]
RNC_SYMTH3.089e-1226.89Ribonuclease 3 OS=Symbiobacterium thermophilum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
back to top