DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRE4 (Ribonuclease 3 OS=Streptococcus equi subsp. equi (strain 4047) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.089e-12
Identity = 64/252 (25.40%), Postives = 113/252 (44.84%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +EN  N  F +KRLLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF ++    A     + +E               G      +L D+ E+   A+ +D   +  + ++       + +G  E +      L+EL Q    V + +++  + G    KQ ++           +V V    ++  +   K++A+ +AA+ AL +L++
Sbjct:    8 LENSFNIRFDDKRLLETAFTHTSYANEHRLLNISHNERLEFLGDAVLQLIISEYLFAKYPKQTEGDMSKLRSTIVREESLA------GFSRYCSFDAYIKLGRGEE-------------KSGGRHRDTILGDLFEAFLGALLLDKGIEEVRRFLNQVMIPQVEQGTFEKVKDYKTCLQELLQAKGDVVIDYQVISETGPAHAKQFEV-----------AVLVGEDHLSKGTGRSKKLAEQDAAKNALAQLSE 229          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACLM (Ribonuclease 3 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.089e-12
Identity = 56/226 (24.78%), Postives = 113/226 (50.00%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR--HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            F ++ LL+ A THSS+T+        + +RLEF+GD AL L +S+Y++  YP+   G+LS +R++ + TE LA  +   GF +F+R  H    +  + +E     + E+    + G++   + + ++ + I   +   +  D       +  +++    L+E+ Q     T+ +K+ ++ G   D       R  +A+V+ +G  +     + K++A+  AA  A+
Sbjct:   16 FNDEYLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE----TTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKND------DYVKVIDYKTELQEVLQIGGETTISYKILKEEGPAHD-------RSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAI 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACLA (Ribonuclease 3 OS=Lactococcus lactis subsp. lactis GN=rnc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.089e-12
Identity = 56/226 (24.78%), Postives = 113/226 (50.00%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVR--HSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            F ++ LL+ A THSS+T+        + +RLEF+GD AL L +S+Y++  YP+   G+LS +R++ + TE LA  +   GF +F+R  H    +  + +E     + E+    + G++   + + ++ + I   +   +  D       +  +++    L+E+ Q     T+ +K+ ++ G   D       R  +A+V+ +G  +     + K++A+  AA  A+
Sbjct:   16 FNDEDLLKTAFTHSSFTNEERLPKIANNERLEFLGDVALSLVISDYLYRTYPEKLEGELSKMRSSIVRTESLANFSRSCGFGEFLRLGHGEEKMGGRDRE----TTLENLFEAFLGALFIDQGMDEVRKFIQHVVIPHVKND------DYVKVIDYKTELQEVLQIGGETTISYKILKEEGPAHD-------RSFVAAVFNNGKELGRGLGKSKKVAEQKAAENAI 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CHLSY (Ribonuclease 3 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.089e-12
Identity = 69/249 (27.71%), Postives = 115/249 (46.18%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS--------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQV---DIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            M D +  +E  I   F+++ LL+ A  H S  +         T  +RLEF+GD+ L    + ++F  +P  D   L+  RAA +ST+ LA  A +                 + ++A     EDN     G     K+LAD+ E++  AIY+D   +  + +++  ++  +E I+ ++       P T L +L Q   KQ+    I+  R     R+ + +V V G     + S +KE AK  AAR+AL
Sbjct:    1 MSDRLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQF---------------NLGQYAYLSRGEDNP----GGRSRQKLLADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHID-----LDPTTRLQELMQARFKQLPDYSIEEERGPEHQREYVMAVTVAGRKFTGSGSSKKE-AKRAAARKAL 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CHLAA (Ribonuclease 3 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.089e-12
Identity = 69/249 (27.71%), Postives = 115/249 (46.18%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS--------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQV---DIKHWR---KNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            M D +  +E  I   F+++ LL+ A  H S  +         T  +RLEF+GD+ L    + ++F  +P  D   L+  RAA +ST+ LA  A +                 + ++A     EDN     G     K+LAD+ E++  AIY+D   +  + +++  ++  +E I+ ++       P T L +L Q   KQ+    I+  R     R+ + +V V G     + S +KE AK  AAR+AL
Sbjct:    1 MSDRLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTDNERLEFLGDSVLHFVTTTWLFETFPDQDEATLTNWRAALVSTKGLAECAAQF---------------NLGQYAYLSRGEDNP----GGRSRQKLLADLFEALVGAIYLDQGLETARAFIVPFWQARIEQIIHID-----LDPTTRLQELMQARFKQLPDYSIEEERGPEHQREYVMAVTVAGRKFTGSGSSKKE-AKRAAARKAL 224          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRZJ (Ribonuclease 3 OS=Streptococcus pneumoniae (strain JJA) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPS (Ribonuclease 3 OS=Streptococcus pneumoniae (strain CGSP14) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPN (Ribonuclease 3 OS=Streptococcus pneumoniae GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFADKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP7 (Ribonuclease 3 OS=Streptococcus pneumoniae (strain 70585) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 69/248 (27.82%), Postives = 110/248 (44.35%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K+LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFTDKKLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACPL (Ribonuclease 3 OS=Lactobacillus plantarum GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 65/240 (27.08%), Postives = 109/240 (45.42%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD------IDFDLQKLWM-----IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LL EA T +SY +         Y+R+EF+GDA L L +S Y++  Y  +  G+L+ LRAA +  E  A  A +  F +++R        K ++ A A  ++              +L DI ES   A+Y+D      + F  Q ++       F G+ +   TL+E  Q+   V + ++L +++G           R    +V  DG  +       K+ A+ +AAR+A  +L Q
Sbjct:   17 FNDPDLLAEAFTQASYVNEHQDQQLKYYERVEFLGDAVLELVVSEYLYKRYKDMPQGKLTRLRAAMVCEESFASFARECDFPQYIRLG------KGEQKAHAWERD-------------SLLCDIFESFVGALYLDQGREPVLKFVHQVIFPKLDEGRFDGVFDYKTTLQEYLQRDGDVAIDYQLIEQDGP-------ANERSYEIAVLADGQKIGEGWGHSKKEAEQSAARQAYSQLQQ 230          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_STRE43.089e-1225.40Ribonuclease 3 OS=Streptococcus equi subsp. equi (... [more]
RNC_LACLM3.089e-1224.78Ribonuclease 3 OS=Lactococcus lactis subsp. cremor... [more]
RNC_LACLA3.089e-1224.78Ribonuclease 3 OS=Lactococcus lactis subsp. lactis... [more]
RNC_CHLSY3.089e-1227.71Ribonuclease 3 OS=Chloroflexus aurantiacus (strain... [more]
RNC_CHLAA3.089e-1227.71Ribonuclease 3 OS=Chloroflexus aurantiacus (strain... [more]
RNC_STRZJ4.034e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_STRPS4.034e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_STRPN4.034e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae GN=rnc ... [more]
RNC_STRP74.034e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_LACPL4.034e-1227.08Ribonuclease 3 OS=Lactobacillus plantarum GN=rnc P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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