DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_DESRM (Ribonuclease 3 OS=Desulfotomaculum reducens (strain MI-1) GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 60/243 (24.69%), Postives = 108/243 (44.44%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTS------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVT----------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            + + + N  LL +ALTHSS             QRLEF+GDA L L +S +++  +P    G+L+ +RA+++    LA+VA      + +R                   E+ +    G  + P +LAD  E++  AIY+D   ++ + +++     +++ +V           L+E+ QQ  P  L + +  ++G   D       +   A V   G  +   S   K+ A+  AA++A   L
Sbjct:   15 LGFKWHNPTLLIQALTHSSCVHENRGHGLCHNQRLEFLGDAVLELIISEHLYKMFPDRTEGELTKMRASSVCEPSLAKVARGLDLGRCLRMGRG---------------EERS----GGRERPSILADAFEALLGAIYLDQGLEISRHFVLNCLSSIIDDVVAGRLDRDYKTELQEILQQSSPDPLTYTIMDESGPDHD-------KTFTAGVIYKGKVIGKGSGHSKKEAEQQAAKDAFQHL 231          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CLOTE (Ribonuclease 3 OS=Clostridium tetani GN=rnc PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.034e-12
Identity = 68/248 (27.42%), Postives = 115/248 (46.37%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSY----QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI--FRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHW--RKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPVN 848
            ++N I   F+N +LL  ALTHSSY +        +RLEF+GD+ L L ++ Y+F+ Y     G+LS  RA  +    L  +A                  K  E  E +       + GG  +   +LAD VE++ A+IY+D   D+ + +++  F  ++E  +  E +       T L ++ QK+G      + IKH      RK    V +  + +       K+ ++ NAA++A+    ++M VN
Sbjct:   10 LQNKIEIKFENIKLLHIALTHSSYANEKKRIQYNERLEFLGDSVLQLVITEYLFMNYKDKSEGELSKKRALIVCENSLFSIA------------------KNLELGEYIKMSKGEELTGGRERI-SILADAVEALIASIYLDKGIDVVREFILKNFYNIVEKAMKDEIILDYK---TKLQEIIQKDGDIQINYILIKHEGPPHRRKFYTEVKIKDNVLGYGIGYSKKESEQNAAKKAI----ENMEVN 231          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRZP (Ribonuclease 3 OS=Streptococcus pneumoniae (strain P1031) GN=rnc PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.269e-12
Identity = 69/248 (27.82%), Postives = 109/248 (43.95%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFNQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVIIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_THESQ (Ribonuclease 3 OS=Thermotoga sp. (strain RQ2) GN=rnc PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 69/236 (29.24%), Postives = 108/236 (45.76%), Query Frame = 3
Query:  162 NFKNKRLLEEALTHSSYTDST---------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-LQKLW-MIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKN---RKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            NFKN+ LL  AL HSSY +           S ++LEF+GDA L L +   ++  YP+ + G L+ +++A  S E LA V+ K    KF+                    E+ T    G      +LAD  E++ AAIY+D  ++ +++L+   F   +E I+  E L      +  + +   K   +  +    KN   R  +  V VDG  +A+     K+ A+  AAR A  KL
Sbjct:   19 NFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKG---------------EEKT----GGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYVLVRTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAARIAYEKL 235          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_THEMA (Ribonuclease 3 OS=Thermotoga maritima GN=rnc PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 69/236 (29.24%), Postives = 108/236 (45.76%), Query Frame = 3
Query:  162 NFKNKRLLEEALTHSSYT---------DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-LQKLW-MIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKN---RKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            NFKN+ LL  AL HSSY          D  S ++LEF+GDA L L +   ++  YP+ + G L+ +++A  S E LA V+ K    KF+                    E+ T    G      +LAD  E++ AAIY+D  ++ +++L+   F   +E I+  E L      +  + +   K   +  +    KN   R  +  V V+G  +A+     K+ A+  AAR A  KL
Sbjct:   19 NFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKG---------------EEKT----GGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL 235          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRZT (Ribonuclease 3 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rnc PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 69/248 (27.82%), Postives = 109/248 (43.95%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFTDKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPJ (Ribonuclease 3 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rnc PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 69/248 (27.82%), Postives = 109/248 (43.95%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPI (Ribonuclease 3 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rnc PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 69/248 (27.82%), Postives = 109/248 (43.95%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXK 824
            M++    ++N     F +K LLE A TH+SY +       +  +RLEF+GDA L L +S Y++  YP+   G LS LRA  +  E LA      GF         A D +  +F +    E+ +    G      +L D  E+   A+   +D D+ K+      ++ P V   E +      T L +L Q NG  V I++   +    A        V V+G  +       K++A+  AA+ A+ K
Sbjct:    1 MKELQTVLKNHFAIEFADKNLLETAFTHTSYANEHRLLKISHNERLEFLGDAVLQLLISEYLYKKYPKKPEGDLSKLRAMIVREESLA------GF---------ARDCQFDQFIKLGKGEEKS----GGRNRDTILGDAFEAFLGALL--LDKDVAKVKEFIYQVMIPKVEAGEFEMITDYKTHLQELLQVNG-DVAIRYQVISETGPAHDKVFDVEVLVEGKSIGQGQGRSKKLAEQEAAKNAVEK 226          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEPG (Ribonuclease 3 OS=Pseudomonas putida (strain GB-1) GN=rnc PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 47/142 (33.10%), Postives = 68/142 (47.89%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566
            +E  + Y FKN+  +  ALTH SY    + +RLEF+GDA L       +F  +PQ   GQLS LRA  +  E LAR+A      +++R  +  L                     G  +   +LAD +E++  AIY+D D D
Sbjct:    8 LERKLGYTFKNQDQMLLALTHRSYAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDADMD 129          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORBU (Ribonuclease 3 OS=Borrelia burgdorferi GN=rnc PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 63/246 (25.61%), Postives = 116/246 (47.15%), Query Frame = 3
Query:  138 YVENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID-----------FDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            ++EN+ + +F N  LL  AL HSSY++     S++ +RLEF+GD+ L L ++++++  YP    G+LS  R+  +S + L+ +A  +  G Y  +     + D + K+                      +LAD +E+   AIY+D             FD+    M  RG  +   + L+E  Q+   ++  +KL ++ G   D       +     +YV  +F+++   + K+ A++ AA  AL
Sbjct:   22 FLENL-SIDFSNFDLLNTALCHSSYSNELDQKSSNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSNIAREINLGSYILLGRGEESNDGRNKK---------------------GILADAIEAFVGAIYLDSGFSRATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHD-------KVFCVELYVGENFISNGKGKSKKEAEMRAAEVAL 238          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_DESRM4.034e-1224.69Ribonuclease 3 OS=Desulfotomaculum reducens (strai... [more]
RNC_CLOTE4.034e-1227.42Ribonuclease 3 OS=Clostridium tetani GN=rnc PE=3 S... [more]
RNC_STRZP5.269e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_THESQ6.882e-1229.24Ribonuclease 3 OS=Thermotoga sp. (strain RQ2) GN=r... [more]
RNC_THEMA6.882e-1229.24Ribonuclease 3 OS=Thermotoga maritima GN=rnc PE=1 ... [more]
RNC_STRZT6.882e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_STRPJ6.882e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_STRPI6.882e-1227.82Ribonuclease 3 OS=Streptococcus pneumoniae (strain... [more]
RNC_PSEPG6.882e-1233.10Ribonuclease 3 OS=Pseudomonas putida (strain GB-1)... [more]
RNC_BORBU6.882e-1225.61Ribonuclease 3 OS=Borrelia burgdorferi GN=rnc PE=3... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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