DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_NEUCR (Dicer-like protein 1 OS=Neurospora crassa GN=dcl-1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12
Identity = 58/226 (25.66%), Postives = 97/226 (42.92%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA----LDDKVKEFAEAVSQEDNTAVYGG----------------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG 749
            + Y FK+ RLL  A  H +Y        SYQRLEF+GDA   +   +Y+F  +P  DP  L+  + A +S + L  ++   GF K +   + +    + + V E  EA+      A+  G                + + PK L+D+VE+   AI+VD ++D   +   F   + P    + L +      PVT +  +      +     WR   K + +   +G
Sbjct: 1265 MGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADPQWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQEAINAGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHVLPFFEDMHLYDTFANKHPVTFVANMM---AHKFRCNEWRSFAKELDTDVTEG 1487          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ROSCS (Ribonuclease 3 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11
Identity = 70/242 (28.93%), Postives = 111/242 (45.87%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDST--------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI-KHWRKNRKNIASVYVDGSFVASASSE--------QKEIAKLNAAREALXKL 827
            ++  F ++RLL +ALTH S+ +          S +RLEF+GDA +    +  VF  +P    G L+  RAA I TE LA  A +   Y    H+  A  ++                  G+ + P +LAD  E++ AAI++D   D  + +++   L E   TL  LQ+Q  PV    KL  +   +  I   +R   ++      + +F A A  E         K+ A+ +AAR+AL +L
Sbjct:   12 LDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLVFERFPDAGEGYLTAWRAALIRTETLASFARR---YDLGSHTLLARGEE----------------SSGARQRPSLLADTFEAVVAAIFIDQGLDAVRKFLL--PLFEE--TLATLQEQGLPVDYKSKLQARIQAERGITPRYRMIERSGPEHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRL 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEPK (Ribonuclease 3 OS=Pseudomonas putida (strain KT2440) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566
            +E  + Y FKN+  +  ALTH SY    + +RLEF+GDA L       +F  +PQ   GQLS LRA  +  E LAR+A       ++R  +  L                     G  +   +LAD +E++  AIY+D D D
Sbjct:    8 LERKLGYTFKNQDQMLLALTHRSYAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDADMD 129          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEP1 (Ribonuclease 3 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566
            +E  + Y FKN+  +  ALTH SY    + +RLEF+GDA L       +F  +PQ   GQLS LRA  +  E LAR+A       ++R  +  L                     G  +   +LAD +E++  AIY+D D D
Sbjct:    8 LERKLGYTFKNQDQMLLALTHRSYAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDADMD 129          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NEIG2 (Ribonuclease 3 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11
Identity = 64/243 (26.34%), Postives = 109/243 (44.86%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ-------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845
            ++  + Y F++  LL  ALTH S+  +   +R EF+GD+ L   ++  +F A+P+L  G+LS LRA+ ++   LA +A +      +   A  L                     G  + P +LAD +E++ AA+  D DF+  +   + R L    V   + Q Q +   T L +  Q       K   +  I H   +   I+    +  FV  A    ++ A+  AA+EAL  L + +P+
Sbjct:   14 IQKKLGYAFRDMSLLRRALTHRSH-HAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELK-------------------SGGFRRPSILADAMEAMFAAVSFDADFNTAE--KVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPL 234          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACSS (Ribonuclease 3 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11
Identity = 59/227 (25.99%), Postives = 104/227 (45.81%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            F N  LL+EA THSSY +          +RLEF+GDA + + +S Y++  YP    G+L+ LRAA + T+  +  + +  F +++R      ++K    A A   ED    + G++   +    +V+ ++  I+  I+         F    +    L+E  QQ   + + ++L  + G   D       R+    V V    + S     K+ A+  AA++AL +L
Sbjct:   17 FNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVSEYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKG--EEKNGARARATLLEDLFEAFNGALFLDQGRDAVVDFVSQVIFPKIEAG------EFSDQTDYKTNLQEFLQQDGEIEIDYQLLAEVGPSHD-------RQFEVDVLVGDRVLGSGVGRNKKAAEQAAAKKALEQL 228          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACTP2 (Ribonuclease 3 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11
Identity = 64/236 (27.12%), Postives = 112/236 (47.46%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD--LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ------KNGKQVDIK---HWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++Y F N   L +ALTH S   + + +RLEF+GD+ L  A+   +F  +P+ + G+LS +RA  +  + LA +A + G  +++R  A  L                     G  +   +L+D VE+I AAIY+D   D  ++++ + ++ LL     ++    Q  P T L +  Q         + +DIK   H +  +       ++  F+   +S +K  A+ NAA + L KL
Sbjct:   10 LSYQFTNLDYLLQALTHRS-AGAKNNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELK-------------------SGGYRRESILSDCVEAIIAAIYLDAGMDKAIEQVHLWYQDLL---AEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRK--AEQNAAEQVLAKL 220          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRTD (Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 65/234 (27.78%), Postives = 105/234 (44.87%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            F  K LLE A TH+SY +       +  +RLEF+GDAAL L +S Y++  YP    G++S +R+  +  E LA      GF +++R      ++K                  G  +   +L D+ E+   A+Y  +D  L  +      ++ P V      +     T L +  Q NGK VDI +   +    A        V VDG  +++   + K++A+  AA+ AL +L
Sbjct:   16 FSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKG--EEK-----------------SGGRERATILGDLWEAFLGALY--LDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGK-VDITYTVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQL 227          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRT2 (Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 65/234 (27.78%), Postives = 105/234 (44.87%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            F  K LLE A TH+SY +       +  +RLEF+GDAAL L +S Y++  YP    G++S +R+  +  E LA      GF +++R      ++K                  G  +   +L D+ E+   A+Y  +D  L  +      ++ P V      +     T L +  Q NGK VDI +   +    A        V VDG  +++   + K++A+  AA+ AL +L
Sbjct:   24 FSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKG--EEK-----------------SGGRERATILGDLWEAFLGALY--LDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGK-VDITYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQL 235          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRT1 (Ribonuclease 3 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 65/234 (27.78%), Postives = 105/234 (44.87%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            F  K LLE A TH+SY +       +  +RLEF+GDAAL L +S Y++  YP    G++S +R+  +  E LA      GF +++R      ++K                  G  +   +L D+ E+   A+Y  +D  L  +      ++ P V      +     T L +  Q NGK VDI +   +    A        V VDG  +++   + K++A+  AA+ AL +L
Sbjct:   24 FSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKG--EEK-----------------SGGRERATILGDLWEAFLGALY--LDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGK-VDITYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQL 235          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
DCL1_NEUCR6.882e-1225.66Dicer-like protein 1 OS=Neurospora crassa GN=dcl-1... [more]
RNC_ROSCS1.174e-1128.93Ribonuclease 3 OS=Roseiflexus castenholzii (strain... [more]
RNC_PSEPK1.174e-1133.10Ribonuclease 3 OS=Pseudomonas putida (strain KT244... [more]
RNC_PSEP11.174e-1133.10Ribonuclease 3 OS=Pseudomonas putida (strain F1 / ... [more]
RNC_NEIG21.174e-1126.34Ribonuclease 3 OS=Neisseria gonorrhoeae (strain NC... [more]
RNC_LACSS1.174e-1125.99Ribonuclease 3 OS=Lactobacillus sakei subsp. sakei... [more]
RNC_ACTP21.174e-1127.12Ribonuclease 3 OS=Actinobacillus pleuropneumoniae ... [more]
RNC_STRTD1.533e-1127.78Ribonuclease 3 OS=Streptococcus thermophilus (stra... [more]
RNC_STRT21.533e-1127.78Ribonuclease 3 OS=Streptococcus thermophilus (stra... [more]
RNC_STRT11.533e-1127.78Ribonuclease 3 OS=Streptococcus thermophilus (stra... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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