DY262448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_NEUCR (Dicer-like protein 1 OS=Neurospora crassa GN=dcl-1 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 6.882e-12 Identity = 58/226 (25.66%), Postives = 97/226 (42.92%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDS----TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAA----LDDKVKEFAEAVSQEDNTAVYGG----------------SIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDG 749 + Y FK+ RLL A H +Y SYQRLEF+GDA + +Y+F +P DP L+ + A +S + L ++ GF K + + + + + V E EA+ A+ G + + PK L+D+VE+ AI+VD ++D + F + P + L + PVT + + + WR K + + +G Sbjct: 1265 MGYKFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADPQWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQEAINAGKTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDSEYDYSVVQNFFNMHVLPFFEDMHLYDTFANKHPVTFVANMM---AHKFRCNEWRSFAKELDTDVTEG 1487
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ROSCS (Ribonuclease 3 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rnc PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11 Identity = 70/242 (28.93%), Postives = 111/242 (45.87%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDST--------SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI-KHWRKNRKNIASVYVDGSFVASASSE--------QKEIAKLNAAREALXKL 827 ++ F ++RLL +ALTH S+ + S +RLEF+GDA + + VF +P G L+ RAA I TE LA A + Y H+ A ++ G+ + P +LAD E++ AAI++D D + +++ L E TL LQ+Q PV KL + + I +R ++ + +F A A E K+ A+ +AAR+AL +L Sbjct: 12 LDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLVFERFPDAGEGYLTAWRAALIRTETLASFARR---YDLGSHTLLARGEE----------------SSGARQRPSLLADTFEAVVAAIFIDQGLDAVRKFLL--PLFEE--TLATLQEQGLPVDYKSKLQARIQAERGITPRYRMIERSGPEHQPEFTFEALAGDESLGTGRGASKQAAEQDAARDALDRL 230
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEPK (Ribonuclease 3 OS=Pseudomonas putida (strain KT2440) GN=rnc PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11 Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566 +E + Y FKN+ + ALTH SY + +RLEF+GDA L +F +PQ GQLS LRA + E LAR+A ++R + L G + +LAD +E++ AIY+D D D Sbjct: 8 LERKLGYTFKNQDQMLLALTHRSYAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDADMD 129
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEP1 (Ribonuclease 3 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rnc PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11 Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566 +E + Y FKN+ + ALTH SY + +RLEF+GDA L +F +PQ GQLS LRA + E LAR+A ++R + L G + +LAD +E++ AIY+D D D Sbjct: 8 LERKLGYTFKNQDQMLLALTHRSYAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDADMD 129
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NEIG2 (Ribonuclease 3 OS=Neisseria gonorrhoeae (strain NCCP11945) GN=rnc PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11 Identity = 64/243 (26.34%), Postives = 109/243 (44.86%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ-------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845 ++ + Y F++ LL ALTH S+ + +R EF+GD+ L ++ +F A+P+L G+LS LRA+ ++ LA +A + + A L G + P +LAD +E++ AA+ D DF+ + + R L V + Q Q + T L + Q K + I H + I+ + FV A ++ A+ AA+EAL L + +P+ Sbjct: 14 IQKKLGYAFRDMSLLRRALTHRSH-HAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELK-------------------SGGFRRPSILADAMEAMFAAVSFDADFNTAE--KVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPL 234
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACSS (Ribonuclease 3 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rnc PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11 Identity = 59/227 (25.99%), Postives = 104/227 (45.81%), Query Frame = 3 Query: 165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 F N LL+EA THSSY + +RLEF+GDA + + +S Y++ YP G+L+ LRAA + T+ + + + F +++R ++K A A ED + G++ + +V+ ++ I+ I+ F + L+E QQ + + ++L + G D R+ V V + S K+ A+ AA++AL +L Sbjct: 17 FNNLALLDEAFTHSSYVNEHRELGLRDNERLEFLGDAVMEITVSEYLYKKYPDWPEGKLTRLRAAIVCTKSFSSFSKEAHFDRYIRLGKG--EEKNGARARATLLEDLFEAFNGALFLDQGRDAVVDFVSQVIFPKIEAG------EFSDQTDYKTNLQEFLQQDGEIEIDYQLLAEVGPSHD-------RQFEVDVLVGDRVLGSGVGRNKKAAEQAAAKKALEQL 228
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACTP2 (Ribonuclease 3 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rnc PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.174e-11 Identity = 64/236 (27.12%), Postives = 112/236 (47.46%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD--LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ------KNGKQVDIK---HWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 ++Y F N L +ALTH S + + +RLEF+GD+ L A+ +F +P+ + G+LS +RA + + LA +A + G +++R A L G + +L+D VE+I AAIY+D D ++++ + ++ LL ++ Q P T L + Q + +DIK H + + ++ F+ +S +K A+ NAA + L KL Sbjct: 10 LSYQFTNLDYLLQALTHRS-AGAKNNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARQFGLGEYMRLGAGELK-------------------SGGYRRESILSDCVEAIIAAIYLDAGMDKAIEQVHLWYQDLL---AEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLDIKGEAHNQTFKVTCKIEMLEEIFIGIGTSRRK--AEQNAAEQVLAKL 220
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRTD (Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 65/234 (27.78%), Postives = 105/234 (44.87%), Query Frame = 3 Query: 165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 F K LLE A TH+SY + + +RLEF+GDAAL L +S Y++ YP G++S +R+ + E LA GF +++R ++K G + +L D+ E+ A+Y +D L + ++ P V + T L + Q NGK VDI + + A V VDG +++ + K++A+ AA+ AL +L Sbjct: 16 FSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKG--EEK-----------------SGGRERATILGDLWEAFLGALY--LDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGK-VDITYTVIDESGPAHAKEFTMQVAVDGKELSTGFGKSKKLAEQAAAKSALEQL 227
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRT2 (Ribonuclease 3 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 65/234 (27.78%), Postives = 105/234 (44.87%), Query Frame = 3 Query: 165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 F K LLE A TH+SY + + +RLEF+GDAAL L +S Y++ YP G++S +R+ + E LA GF +++R ++K G + +L D+ E+ A+Y +D L + ++ P V + T L + Q NGK VDI + + A V VDG +++ + K++A+ AA+ AL +L Sbjct: 24 FSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKG--EEK-----------------SGGRERATILGDLWEAFLGALY--LDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGK-VDITYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQL 235
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRT1 (Ribonuclease 3 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 65/234 (27.78%), Postives = 105/234 (44.87%), Query Frame = 3 Query: 165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIA-------SVYVDGSFVASASSEQKEIAKLNAAREALXKL 827 F K LLE A TH+SY + + +RLEF+GDAAL L +S Y++ YP G++S +R+ + E LA GF +++R ++K G + +L D+ E+ A+Y +D L + ++ P V + T L + Q NGK VDI + + A V VDG +++ + K++A+ AA+ AL +L Sbjct: 24 FSQKDLLETAFTHTSYANEHRLLNISHNERLEFLGDAALQLVISVYLYNRYPNKPEGEMSKMRSTIVREESLAGFTKACGFEQYIRLGKG--EEK-----------------SGGRERATILGDLWEAFLGALY--LDQGLPAVEKFLNQVMIPQVEKGNFDRVIDYKTALQERLQVNGK-VDITYTVIDESGPAHAKEFTMQVAVDGKELSTGLGKSKKLAEQAAAKSALEQL 235 The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 214
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bpback to top |