DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RHISN (Ribonuclease 3 OS=Rhizobium sp. (strain NGR234) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            +E  I Y F  K  L+ ALTHSS  ++  ++YQRLEF+GD  LGL ++  +F  +   + G+LS+     +S E  ARVA +   ++++R                 +  D   + G  +    V AD+VES+ AAIY+D
Sbjct:   15 LETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLFQTFLDANEGELSVRLNQLVSAESCARVADELSLHEYIR-----------------TGSDVKKITGKHMM--NVRADVVESLIAAIYLD 135          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RHIME (Ribonuclease 3 OS=Rhizobium meliloti GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 587
            +E  I Y F  K  L+ ALTHSS     + +YQRLEF+GD  LGL ++  +F  +   + G+LS+     +S E  A+VA +   ++F+R                 +  D   + G  +    V AD+VES+ AAIY+D   D  + +++
Sbjct:   14 LEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLFQTFTDANEGELSVRLNQLVSAESCAKVADELSLHEFIR-----------------TGSDVKKITGKHMM--NVRADVVESLIAAIYLDGGLDAARRFVL 145          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEFS (Ribonuclease 3 OS=Pseudomonas fluorescens (strain SBW25) GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E  + Y FK++ L+  ALTH S+    + +RLEF+GDA L       +F  +PQ   GQLS LRA  +  E LA +A   G  +++R  +  L                     G  +   +LAD +E++  AIY+D   +  K   +   L   I +L  +     P T L +  Q  G
Sbjct:    8 LERQLGYTFKDQELMVLALTHRSFAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDAGMEAAK-ERVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRG 167          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NEIMA (Ribonuclease 3 OS=Neisseria meningitidis serogroup A GN=rnc PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11
Identity = 64/243 (26.34%), Postives = 110/243 (45.27%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ-------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845
            ++  + Y F++  LL +ALTH S+  +   +R EF+GD+ L   ++  +F A+P+L  G+LS LRA+ ++   LA +A +      +   A  L                     G  + P +LAD +E++ AA+  D DF+  +   + R L    V   + Q Q +   T L +  Q       K   +  I H   +   I+    +  FV  A    ++ A+  AA+EAL  L + +P+
Sbjct:   14 IQKKLGYAFRDISLLRQALTHRSH-HAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELK-------------------SGGFRRPSILADAMEAMFAAVSFDADFNTAE--KVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPL 234          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SHEPW (Ribonuclease 3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11
Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-LQKL---WMIFR-GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI 698
            + Y F  + LL++ALTH S ++  + +RLEF+GD+ L + +S+ ++  +P+   G LS +RA  +  + LA +A++     +++     L                     G  +   +LAD VE+I  AIY+D D +  +KL   W   R  ++EPI        Q  P TLL +  QK  K + I
Sbjct:   14 LGYEFAEQALLDQALTHRSASNKHN-ERLEFLGDSILSIVISDALYHQFPKATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELK-------------------SGGFRRESILADAVEAIIGAIYLDSDIEKCRKLVLNWYASRLRVIEPI-------NQKDPKTLLQEHLQKFRKPLPI 173          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORPD (Ribonuclease 3 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11
Identity = 57/216 (26.39%), Postives = 100/216 (46.30%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 788
            +E  +++ F N  LLE+ALTH S++ +   +RLEF+GD+ L   ++  +F  +P+LD G LS LRA  +    LA +  +    +++R     L                     G  + P +LAD VE+I  A ++D  FD  +  ++              Q QP   ++  K   K+ K + ++ + + RK    +Y   +   +A S+Q E+
Sbjct:    6 LETRLDHRFGNAALLEQALTHRSHS-ARHNERLEFLGDSVLNFVVAAMLFERFPKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELK-------------------SGGFRRPSILADAVEAIFGAAFLDGGFDTARKVIV-------------RQYQPVLASVDPKTLGKDAKTL-LQEFLQGRKLALPLYTVVATHGAAHSQQFEV 187          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORGA (Ribonuclease 3 OS=Borrelia garinii GN=rnc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11
Identity = 60/248 (24.19%), Postives = 116/248 (46.77%), Query Frame = 3
Query:  138 YVENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            ++EN+ + +F N  LL  AL+HSSY++     + + +RLEF+GD+ L L ++++++  YP    G+LS  R+  +S + L+ +A  +  G Y  +     + D + K+                      +LAD +E+   AIY+D  F +   +++  GL +  +               L+E  Q+   ++  +KL ++ G   D       +     +YV   F+++   + K+ A++ AA  AL
Sbjct:   21 FLENL-SIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKK---------------------GILADAIEAFVGAIYLDSGFSMATEFVV--GLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHD-------KVFCVELYVGEKFISNGKGKSKKEAEMRAAEVAL 237          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORAP (Ribonuclease 3 OS=Borrelia afzelii (strain PKo) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11
Identity = 63/246 (25.61%), Postives = 115/246 (46.75%), Query Frame = 3
Query:  138 YVENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID-----------FDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            ++EN+ + +F N  LL  AL+HSSY++     S + +RLEF+GD+ L L ++++++  YP    G+LS  R+  +S + L+ +A  +  G Y  +     + D + K+                      +LAD +E+   AIY+D             FD+    M  RG  +   + L+E  Q+   ++  +KL ++ G   D       +     +YV   F+++   + K+ A++ AA  AL
Sbjct:   21 FLENL-SIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKK---------------------GILADAIEAFVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKLDKEIGPDHD-------KVFCVELYVGEKFISNGKGKSKKEAEMRAAEVAL 237          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_AGRVS (Ribonuclease 3 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11
Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 587
            VE +I Y+F  K  L++ALTHSS   +  + Y+RLEF+GD  LGL ++ ++F  +     G+LS+     +S E  A VA +   ++++R  A      VK+  +                   V AD+VES+ AAIY+D   +  + +++
Sbjct:   15 VEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLFKVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGA-----DVKKLTDK--------------NMLNVRADVVESLIAAIYLDAGLEAARAFVL 146          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPZ (Ribonuclease 3 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_RHISN1.533e-1133.57Ribonuclease 3 OS=Rhizobium sp. (strain NGR234) GN... [more]
RNC_RHIME1.533e-1131.79Ribonuclease 3 OS=Rhizobium meliloti GN=rnc PE=3 S... [more]
RNC_PSEFS1.533e-1129.28Ribonuclease 3 OS=Pseudomonas fluorescens (strain ... [more]
RNC_NEIMA1.533e-1126.34Ribonuclease 3 OS=Neisseria meningitidis serogroup... [more]
RNC_SHEPW2.002e-1129.41Ribonuclease 3 OS=Shewanella piezotolerans (strain... [more]
RNC_BORPD2.002e-1126.39Ribonuclease 3 OS=Bordetella petrii (strain ATCC B... [more]
RNC_BORGA2.002e-1124.19Ribonuclease 3 OS=Borrelia garinii GN=rnc PE=3 SV=... [more]
RNC_BORAP2.002e-1125.61Ribonuclease 3 OS=Borrelia afzelii (strain PKo) GN... [more]
RNC_AGRVS2.002e-1131.13Ribonuclease 3 OS=Agrobacterium vitis (strain S4 /... [more]
RNC_STRPZ2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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