DY262448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RHISN (Ribonuclease 3 OS=Rhizobium sp. (strain NGR234) GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 47/140 (33.57%), Postives = 73/140 (52.14%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554 +E I Y F K L+ ALTHSS ++ ++YQRLEF+GD LGL ++ +F + + G+LS+ +S E ARVA + ++++R + D + G + V AD+VES+ AAIY+D Sbjct: 15 LETAIGYQFAEKERLDRALTHSSARNARASNYQRLEFLGDRVLGLCVAELLFQTFLDANEGELSVRLNQLVSAESCARVADELSLHEYIR-----------------TGSDVKKITGKHMM--NVRADVVESLIAAIYLD 135
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RHIME (Ribonuclease 3 OS=Rhizobium meliloti GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 48/151 (31.79%), Postives = 76/151 (50.33%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 587 +E I Y F K L+ ALTHSS + +YQRLEF+GD LGL ++ +F + + G+LS+ +S E A+VA + ++F+R + D + G + V AD+VES+ AAIY+D D + +++ Sbjct: 14 LEAAIGYRFAEKERLDRALTHSSARSGRAINYQRLEFLGDRVLGLCVAELLFQTFTDANEGELSVRLNQLVSAESCAKVADELSLHEFIR-----------------TGSDVKKITGKHMM--NVRADVVESLIAAIYLDGGLDAARRFVL 145
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEFS (Ribonuclease 3 OS=Pseudomonas fluorescens (strain SBW25) GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 53/181 (29.28%), Postives = 81/181 (44.75%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 683 +E + Y FK++ L+ ALTH S+ + +RLEF+GDA L +F +PQ GQLS LRA + E LA +A G +++R + L G + +LAD +E++ AIY+D + K + L I +L + P T L + Q G Sbjct: 8 LERQLGYTFKDQELMVLALTHRSFAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLAVLARGFGLGEYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDAGMEAAK-ERVTAWLTSEIESLTLVDTNKDPKTRLQEFLQSRG 167
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NEIMA (Ribonuclease 3 OS=Neisseria meningitidis serogroup A GN=rnc PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.533e-11 Identity = 64/243 (26.34%), Postives = 110/243 (45.27%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ-------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845 ++ + Y F++ LL +ALTH S+ + +R EF+GD+ L ++ +F A+P+L G+LS LRA+ ++ LA +A + + A L G + P +LAD +E++ AA+ D DF+ + + R L V + Q Q + T L + Q K + I H + I+ + FV A ++ A+ AA+EAL L + +P+ Sbjct: 14 IQKKLGYAFRDISLLRQALTHRSH-HAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELK-------------------SGGFRRPSILADAMEAMFAAVSFDADFNTAE--KVVRHLFAERVRRVDFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPL 234
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SHEPW (Ribonuclease 3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rnc PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11 Identity = 55/187 (29.41%), Postives = 91/187 (48.66%), Query Frame = 3 Query: 153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-LQKL---WMIFR-GLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI 698 + Y F + LL++ALTH S ++ + +RLEF+GD+ L + +S+ ++ +P+ G LS +RA + + LA +A++ +++ L G + +LAD VE+I AIY+D D + +KL W R ++EPI Q P TLL + QK K + I Sbjct: 14 LGYEFAEQALLDQALTHRSASNKHN-ERLEFLGDSILSIVISDALYHQFPKATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELK-------------------SGGFRRESILADAVEAIIGAIYLDSDIEKCRKLVLNWYASRLRVIEPI-------NQKDPKTLLQEHLQKFRKPLPI 173
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORPD (Ribonuclease 3 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rnc PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11 Identity = 57/216 (26.39%), Postives = 100/216 (46.30%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEI 788 +E +++ F N LLE+ALTH S++ + +RLEF+GD+ L ++ +F +P+LD G LS LRA + LA + + +++R L G + P +LAD VE+I A ++D FD + ++ Q QP ++ K K+ K + ++ + + RK +Y + +A S+Q E+ Sbjct: 6 LETRLDHRFGNAALLEQALTHRSHS-ARHNERLEFLGDSVLNFVVAAMLFERFPKLDEGDLSRLRANLVKQASLADIGQRLELSQYLRLGEGELK-------------------SGGFRRPSILADAVEAIFGAAFLDGGFDTARKVIV-------------RQYQPVLASVDPKTLGKDAKTL-LQEFLQGRKLALPLYTVVATHGAAHSQQFEV 187
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORGA (Ribonuclease 3 OS=Borrelia garinii GN=rnc PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11 Identity = 60/248 (24.19%), Postives = 116/248 (46.77%), Query Frame = 3 Query: 138 YVENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIV--------------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818 ++EN+ + +F N LL AL+HSSY++ + + +RLEF+GD+ L L ++++++ YP G+LS R+ +S + L+ +A + G Y + + D + K+ +LAD +E+ AIY+D F + +++ GL + + L+E Q+ ++ +KL ++ G D + +YV F+++ + K+ A++ AA AL Sbjct: 21 FLENL-SIDFNNFDLLNTALSHSSYSNELDQKADNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKK---------------------GILADAIEAFVGAIYLDSGFSMATEFVV--GLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPSYKLDKEIGPDHD-------KVFCVELYVGEKFISNGKGKSKKEAEMRAAEVAL 237
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORAP (Ribonuclease 3 OS=Borrelia afzelii (strain PKo) GN=rnc PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11 Identity = 63/246 (25.61%), Postives = 115/246 (46.75%), Query Frame = 3 Query: 138 YVENIINYNFKNKRLLEEALTHSSYTD-----STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID-----------FDLQKLWMIFRGLLEPIVT-LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREAL 818 ++EN+ + +F N LL AL+HSSY++ S + +RLEF+GD+ L L ++++++ YP G+LS R+ +S + L+ +A + G Y + + D + K+ +LAD +E+ AIY+D FD+ M RG + + L+E Q+ ++ +KL ++ G D + +YV F+++ + K+ A++ AA AL Sbjct: 21 FLENL-SIDFNNFDLLNTALSHSSYSNELDQKSDNNERLEFLGDSVLNLIITDHLYKTYPNKSEGELSKARSYIVSEDSLSSIAREIDLGSYILLGRGEESNDGRNKK---------------------GILADAIEAFVGAIYLDSGFLIATEFVVGLFDMYIRLMFNRGDFKDYKSLLQEYVQKKYKISPNYKLDKEIGPDHD-------KVFCVELYVGEKFISNGKGKSKKEAEMRAAEVAL 237
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_AGRVS (Ribonuclease 3 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rnc PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.002e-11 Identity = 47/151 (31.13%), Postives = 78/151 (51.66%), Query Frame = 3 Query: 141 VENIINYNFKNKRLLEEALTHSSYTDS--TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMI 587 VE +I Y+F K L++ALTHSS + + Y+RLEF+GD LGL ++ ++F + G+LS+ +S E A VA + ++++R A VK+ + V AD+VES+ AAIY+D + + +++ Sbjct: 15 VEAVIGYHFIGKERLDKALTHSSARPAKGSDYERLEFLGDRVLGLCVAEHLFKVFRAATEGELSVRLNQLVSAETCAAVADEIQLHRYIRTGA-----DVKKLTDK--------------NMLNVRADVVESLIAAIYLDAGLEAARAFVL 146
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPZ (Ribonuclease 3 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rnc PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11 Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 Query: 165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833 F + LLE A TH+SY + + +RLEF+GDA L L +S Y+F YP+ G +S LR+ + E LA GF +F A K +E G + +L D+ E+ A+ +D D + ++ + +G E + L+E Q V + +++ + G KQ ++ S+ V+G+ ++ + K++A+ +AA+ AL +L++ Sbjct: 16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229 The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 214
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bpback to top |