DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPM (Ribonuclease 3 OS=Streptococcus pyogenes serotype M28 GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVRDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPG (Ribonuclease 3 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPF (Ribonuclease 3 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPD (Ribonuclease 3 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQAKGDVVIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPC (Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRPB (Ribonuclease 3 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP8 (Ribonuclease 3 OS=Streptococcus pyogenes serotype M18 GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP6 (Ribonuclease 3 OS=Streptococcus pyogenes serotype M6 GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVVIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP3 (Ribonuclease 3 OS=Streptococcus pyogenes serotype M3 GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
[Close]
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_STRP1 (Ribonuclease 3 OS=Streptococcus pyogenes serotype M1 GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 62/244 (25.41%), Postives = 110/244 (45.08%), Query Frame = 3 
Query:  165 FKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-------IFRGLLEPI----VTLEELQQQPQPVTLLFKLCQKNG----KQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE A TH+SY +       +  +RLEF+GDA L L +S Y+F  YP+   G +S LR+  +  E LA      GF +F    A     K +E               G  +   +L D+ E+   A+ +D   D  + ++       + +G  E +      L+E  Q    V + +++  + G    KQ ++           S+ V+G+ ++    + K++A+ +AA+ AL +L++
Sbjct:   16 FNDLTLLETAFTHTSYANEHRLLNVSHNERLEFLGDAVLQLIISEYLFAKYPKKTEGDMSKLRSMIVREESLA------GFSRFCSFDAYIKLGKGEE-------------KSGGRRRDTILGDLFEAFLGALLLDKGIDAVRRFLKQVMIPQVEKGNFERVKDYKTCLQEFLQTKGDVAIDYQVISEKGPAHAKQFEV-----------SIVVNGAVLSKGLGKSKKLAEQDAAKNALAQLSE 229
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_STRPM2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRPG2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRPF2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRPD2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRPC2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRPB2.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRP82.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRP62.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRP32.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]
RNC_STRP12.615e-1125.41Ribonuclease 3 OS=Streptococcus pyogenes serotype ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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