DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SHEPA (Ribonuclease 3 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 49/182 (26.92%), Postives = 85/182 (46.70%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDI 698
            + Y F  K  L++ALTH S ++  + +RLEF+GD+ L + +S+ ++  +P    G LS +RA  +  + LA +A++     +++     L                     G  +   +LAD VE+I  AIY  +D D++    +     E  + + E   Q  P TLL +  QK  K + +
Sbjct:   14 LGYEFNEKAFLDQALTHRSASNKHN-ERLEFLGDSILSIVISDALYHQFPAATEGDLSRMRATLVCGKMLAEIAIEFKLGDYLKLGPGELK-------------------SGGFRRESILADAVEAIIGAIY--LDSDIENCRQLVLNWYESRLKVIEPINQKDPKTLLQEYLQKYRKPLPV 173          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_MYCS5 (Ribonuclease 3 OS=Mycoplasma synoviae (strain 53) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 69/254 (27.17%), Postives = 117/254 (46.06%), Query Frame = 3
Query:  114 PEMEDAVFYVENIINYNFKNKRLLEEALTHSSYT----DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD------IDFDLQKLWMIF-----RGLLEPIVTLEELQQQPQPVTLLFKLCQ-KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            P +E+   +++   N  +KN  L  EA TH +Y+    +S  Y+RLEF+GD+ +G  +S+Y    +  L+PG+LS LR+  +    L ++A K                KV++  +   ++    V   S     VL+D+VE++ AAIY+D       DF     + I      +   +P   L+E  Q     T+ ++  +  N +  + K W  N+     +Y  G  ++      K+ A+ NAA  AL KL
Sbjct:    7 PSIEELKAFLQKN-NIEYKNIDLFIEATTHKTYSKVNKNSKDYERLEFLGDSLVGFLISDYCVREFSSLEPGELSRLRSKLVDKLALFKIAQKL---------------KVEQIIKTGPKKARNEVLSSS----NVLSDVVEALIAAIYLDQGMQSAKDFIKSHFYEIANKAQNKPNKDPKSELQEYFQTISAETVKYETIEIPNKRSFESKAWHLNK-----IYGTGVGLS------KKDAEKNAAANALSKL 229          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_AGRT5 (Ribonuclease 3 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rnc PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.615e-11
Identity = 47/153 (30.72%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  102 SLPSPEMEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTS--YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            S   P   D +  +E +I Y FK K  L+ ALTH+S   + +  Y+RLEF+GD  LGL ++  +F  +     G+LS+     +S E  A +  + G + F+R  +    D  K   +A+                 V AD+VES+ A +Y+D
Sbjct:    2 SKTKPLSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGS----DVKKLTGKAML---------------NVRADVVESLIATLYLD 135          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_THEP1 (Ribonuclease 3 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 71/243 (29.22%), Postives = 102/243 (41.98%), Query Frame = 3
Query:  162 NFKNKRLLEEALTHSSYT---------DSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQK----------LWMIFRG--LLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            NFKN+ LL  AL HSSY          D  S ++LEF+GDA L L +   ++  YP+ + G L+  ++A  S E LA V+ +    KF+                    E+ T    G      +LAD  E++ AAIY+D  +   K          +  I RG  L +    L+E+ Q    V   + L +      D       R  +  V VDG  +A      K+ A+  AAR A  KL
Sbjct:   19 NFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARAKSAAASEEVLAMVSRELNLGKFLFLGKG---------------EEKT----GGRDRDSILADAFEALLAAIYLDQGYHKIKELFEEEFELYIEKIMRGEMLFDYKTALQEIVQSEHKVPPEYVLVRTEKNDGD-------RIFVVEVRVDGKSIAMGRGRTKKEAEKEAARIAYEKL 235          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEHT (Ribonuclease 3 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rnc PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 67/249 (26.91%), Postives = 112/249 (44.98%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLL------FKLCQKNGKQVDIKHWRKNRKNIASVYVDG--SFVASASSEQKEIAKLNAAREALXKLAQSMP 842
            M+  V  +   I+Y F ++ LLE+A+TH S+    + +RLEF+GD+ L   ++N ++  +P+   G LS +R+  +  + LA   ++ G   ++R     L                     G  +    LAD VE+I  A+++D D + +   +I     E +  +     Q  P TLL       KL       VD K    N+       VDG  S ++  SS +K  A+  AA +AL K+ ++ P
Sbjct:    1 MKKNVTELYKTIDYIFADQGLLEQAMTHRSHKGQHN-ERLEFLGDSILSFVIANALYAKFPKAREGDLSRMRSTLVRGQTLAEFGLEFGLGDYLRLGPGELK-------------------SGGFRRESTLADAVEAIIGAVFLDSDIE-RCGELILSWYEERLNAISPGLNQKDPKTLLQEHLQARKLSLPGYTVVDTKGQAHNQTFTVECIVDGMDSIISVGSSRRK--AEQKAAEKAL-KILKNEP 225          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEAE (Ribonuclease 3 OS=Pseudomonas aeruginosa GN=rnc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 57/188 (30.32%), Postives = 87/188 (46.28%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            M +++  +E  + Y FK++ L+  ALTH SY    + +RLEF+GDA L   +   +F  +PQ   GQLS LRA  +  E LA +A   GF             +V ++    S E    +  G  +   +LAD +E++  AIY+D   D  +   I   L   +  L  +     P T L +  Q  G
Sbjct:    1 MSNSLDRLERKLGYTFKDRDLMVLALTHRSYAGRNN-ERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLA--RGF-------------EVGDYLRLGSGE----LKSGGFRRESILADAMEALIGAIYLDTGMDSAR-ERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRG 167          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEAB (Ribonuclease 3 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 57/188 (30.32%), Postives = 87/188 (46.28%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            M +++  +E  + Y FK++ L+  ALTH SY    + +RLEF+GDA L   +   +F  +PQ   GQLS LRA  +  E LA +A   GF             +V ++    S E    +  G  +   +LAD +E++  AIY+D   D  +   I   L   +  L  +     P T L +  Q  G
Sbjct:    1 MSNSLDRLERKLGYTFKDRDLMVLALTHRSYAGRNN-ERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLA--RGF-------------EVGDYLRLGSGE----LKSGGFRRESILADAMEALIGAIYLDTGMDSAR-ERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRG 167          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEA8 (Ribonuclease 3 OS=Pseudomonas aeruginosa (strain LESB58) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 57/188 (30.32%), Postives = 87/188 (46.28%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            M +++  +E  + Y FK++ L+  ALTH SY    + +RLEF+GDA L   +   +F  +PQ   GQLS LRA  +  E LA +A   GF             +V ++    S E    +  G  +   +LAD +E++  AIY+D   D  +   I   L   +  L  +     P T L +  Q  G
Sbjct:    1 MSNSLDRLERKLGYTFKDRDLMVLALTHRSYAGRNN-ERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLA--RGF-------------EVGDYLRLGSGE----LKSGGFRRESILADAMEALIGAIYLDTGMDSAR-ERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRG 167          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HAEPS (Ribonuclease 3 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rnc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 64/234 (27.35%), Postives = 114/234 (48.72%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD--IDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLF----KLCQKNGKQVDIK---HWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            + Y F N   L +ALTH S   S + +RLEF+GD+ L  A+   ++  +P+ + G+LS +RAA +  + LA VA +    ++++  A  L                     G  +   +L+D VE+I AA+Y+D  ID  ++++   ++ LL   + L E Q+ P+     +    KL     + +DIK   H +  + +     VD  F+ + +S +K  A+ +AA + +  L
Sbjct:   10 LGYQFANLDYLTQALTHRSAA-SKNNERLEFLGDSILNFAIGKALYEKFPKANEGELSRMRAALVKEQTLAVVARQFELGEYMKLGAGELK-------------------SGGYRRESILSDCVEAIIAAVYLDAGIDRAMERVHCWYQQLLND-MQLGEAQKDPKTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFKVSCKVEKVDEIFIGNGTSRRK--AEQDAALQVIKVL 220          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HAEDU (Ribonuclease 3 OS=Haemophilus ducreyi GN=rnc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.415e-11
Identity = 67/244 (27.46%), Postives = 113/244 (46.31%), Query Frame = 3
Query:  138 YVENI---INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD--LQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQ------KNGKQVDIKHWRKNRKNIASVYVD---GSFVASASSEQKEIAKLNAAREALXKL 827
            Y+E +   I Y F N   L +ALTH S     + +RLEF+GD+ L  A+   +F  +PQ + G+LS +RA  +  + LA +A +    ++++  A  L                     G  +   +L+D VE+I AAIY+D   D   ++++  ++ LL+    ++    Q  P T L +  Q         + +DIK    N+    S  ++     F+   +S +K  A+ NAA + L KL
Sbjct:    2 YIERLQKKIGYQFANLDYLLQALTHRSAAAKNN-ERLEFLGDSILNYAIGQALFERFPQANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELK-------------------SGGYRRESILSDCVEAIIAAIYLDAGMDKASERIYAWYQTLLD---EMKPGDAQKDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHNQIFKVSCKIETFTDIFIGIGTSRRK--AEQNAAEQILLKL 220          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_SHEPA2.615e-1126.92Ribonuclease 3 OS=Shewanella pealeana (strain ATCC... [more]
RNC_MYCS52.615e-1127.17Ribonuclease 3 OS=Mycoplasma synoviae (strain 53) ... [more]
RNC_AGRT52.615e-1130.72Ribonuclease 3 OS=Agrobacterium tumefaciens (strai... [more]
RNC_THEP13.415e-1129.22Ribonuclease 3 OS=Thermotoga petrophila (strain RK... [more]
RNC_PSEHT3.415e-1126.91Ribonuclease 3 OS=Pseudoalteromonas haloplanktis (... [more]
RNC_PSEAE3.415e-1130.32Ribonuclease 3 OS=Pseudomonas aeruginosa GN=rnc PE... [more]
RNC_PSEAB3.415e-1130.32Ribonuclease 3 OS=Pseudomonas aeruginosa (strain U... [more]
RNC_PSEA83.415e-1130.32Ribonuclease 3 OS=Pseudomonas aeruginosa (strain L... [more]
RNC_HAEPS3.415e-1127.35Ribonuclease 3 OS=Haemophilus parasuis serovar 5 (... [more]
RNC_HAEDU3.415e-1127.46Ribonuclease 3 OS=Haemophilus ducreyi GN=rnc PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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