DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_SINMW (Ribonuclease 3 OS=Sinorhizobium medicae (strain WSM419) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 47/140 (33.57%), Postives = 71/140 (50.71%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTD--STSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            +E  I Y F  K  L+ ALTHSS     + +YQRLEF+GD  LGL ++  +F  +   + G+LS+     +S E  A+VA +   ++F+R                 +  D   + G  +    V AD+VES+ AAIY+D
Sbjct:   14 LEAAIGYQFAEKERLDRALTHSSARSGRAINYQRLEFLGDRILGLCVAELLFQTFSDANEGELSVRLNQLVSAESCAKVADELSLHEFIR-----------------TGSDVKKITGKHMM--NVRADVVESLIAAIYLD 134          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_MESFL (Ribonuclease 3 OS=Mesoplasma florum GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 63/247 (25.51%), Postives = 111/247 (44.94%), Query Frame = 3
Query:  156 NYNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM---IFRGLLEPIV---------TLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK--NIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            N+  K  + ++   ALTH+SY + T    +YQRLEF+GDA L + +S +++L +     G+L+  R+  +  E L+ +A      K +R     +  K                     + P +L+D+ E++ AAIY+D   ++   W+   IF+ + +             L+E+ Q      L +++  +       KH  K+ K     SV +DG      +   K+ A  NAA++ L KL +S
Sbjct:    9 NFGIKINDSKIFSTALTHNSYANETKTKETYQRLEFLGDAVLQMYVSKFLYLNFTNAPEGKLTKTRSDIVRQETLSEIAKMIDLGKIIRLGQGEIKSK-------------------GYEKPSILSDVYEAVTAAIYLDQTEEVLISWIKSTIFKYIEKNDYKELNHDYKSELQEIIQAEIRSDLEYRVESQ-------KHIEKDNKIEYTVSVNLDGKKYGIGTGFSKQEASQNAAKDCLNKLKKS 229          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LEGPL (Ribonuclease 3 OS=Legionella pneumophila (strain Lens) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            +NY+F N   L++ALTH S   S +Y+R EF+GD+ L   ++N +F  +P    GQLS LR+  +  E LA +A + G   ++      L                     G  +   +LAD +E+I AAIY+D
Sbjct:   12 LNYHFNNMAYLKQALTHCS-AGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGEL-------------------RSGGFRRTSILADALEAILAAIYLD 125          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATO (Ribonuclease 3 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATN (Ribonuclease 3 OS=Francisella tularensis subsp. novicida (strain U112) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATM (Ribonuclease 3 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATH (Ribonuclease 3 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATF (Ribonuclease 3 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA-----------SSLKMDEYI--ILGASEQ--------GGNKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORPE (Ribonuclease 3 OS=Bordetella pertussis GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566
            +E  +++ F +K LLE+ALTH S+  +   +RLEF+GD+ L   ++  +F  Y +LD G LS LRA  +    LA +A +    +++R     L                     G  + P +LAD VE++  A+++D  F+
Sbjct:    9 LETRLDHRFGDKALLEQALTHRSH-GARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELK-------------------SGGFRRPSILADTVEALFGAVFLDAGFE 130          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORPA (Ribonuclease 3 OS=Bordetella parapertussis GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566
            +E  +++ F +K LLE+ALTH S+  +   +RLEF+GD+ L   ++  +F  Y +LD G LS LRA  +    LA +A +    +++R     L                     G  + P +LAD VE++  A+++D  F+
Sbjct:    9 LETRLDHRFGDKALLEQALTHRSH-GARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELK-------------------SGGFRRPSILADTVEALFGAVFLDAGFE 130          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_SINMW4.460e-1133.57Ribonuclease 3 OS=Sinorhizobium medicae (strain WS... [more]
RNC_MESFL4.460e-1125.51Ribonuclease 3 OS=Mesoplasma florum GN=rnc PE=3 SV... [more]
RNC_LEGPL4.460e-1132.84Ribonuclease 3 OS=Legionella pneumophila (strain L... [more]
RNC_FRATO4.460e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. ho... [more]
RNC_FRATN4.460e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. no... [more]
RNC_FRATM4.460e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. me... [more]
RNC_FRATH4.460e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. ho... [more]
RNC_FRATF4.460e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. ho... [more]
RNC_BORPE4.460e-1130.28Ribonuclease 3 OS=Bordetella pertussis GN=rnc PE=3... [more]
RNC_BORPA4.460e-1130.28Ribonuclease 3 OS=Bordetella parapertussis GN=rnc ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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