DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BORBR (Ribonuclease 3 OS=Bordetella bronchiseptica GN=rnc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.460e-11
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD 566
            +E  +++ F +K LLE+ALTH S+  +   +RLEF+GD+ L   ++  +F  Y +LD G LS LRA  +    LA +A +    +++R     L                     G  + P +LAD VE++  A+++D  F+
Sbjct:    9 LETRLDHRFGDKALLEQALTHRSH-GARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQASLADIAQRLDLSQYLRLGEGELK-------------------SGGFRRPSILADTVEALFGAVFLDAGFE 130          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NEIMB (Ribonuclease 3 OS=Neisseria meningitidis serogroup B GN=rnc PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.826e-11
Identity = 63/243 (25.93%), Postives = 110/243 (45.27%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ-------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845
            ++  + Y F++  LL +ALTH S+  +   +R EF+GD+ L   ++  +F A+P+L  G+LS LRA+ ++   LA +A +      +   A  L                     G  + P +LAD +E++ AA+  D DF+  +   + R L    V   + Q Q +   T L +  Q       K   +  I +   +   I+    +  FV  A    ++ A+  AA+EAL  L + +P+
Sbjct:   14 IQKKLGYAFRDISLLRQALTHRSH-HAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELK-------------------SGGFRRPSILADAMEAMFAAVSFDADFNTAE--KVVRHLFADRVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGYANDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPL 234          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATW (Ribonuclease 3 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.826e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDCTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BUCAP (Ribonuclease 3 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rnc PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.826e-11
Identity = 55/238 (23.11%), Postives = 111/238 (46.64%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVD----IKHWRKNRKNIASVY-----VDGSFVASASSEQKEIAKLNAAREALXKL 827
            ++ I+ Y F ++ LL++ALTH S   S   +RLEF+GD+ L   ++N ++  +P +D G +S +RA  +    LA +A +    ++++     L                     G  +   +LA+ VE++  +IY+D +    +  +I +   + +  +     Q  P T L +  Q     +     ++ + +    + +++     +  SF+   +S +K  A+ +AAR+AL KL
Sbjct:    9 IQQILGYTFTHQELLKQALTHRS-ASSKHNERLEFLGDSILSFVIANALYQHFPYIDEGDMSRMRATLVRGNTLAEIAYEFDLGEYLQLGQGELK-------------------SGGFRRESILANTVEALIGSIYLDSNIKTVE-ELILKWYEKRLEKISPGDTQKDPKTRLQEYLQSKHLSLPSYFIVEVYGEAHNQLFTIHCEVSTLSTSFIGKGTSRRK--AEQDAARKALIKL 223          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ACTPJ (Ribonuclease 3 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rnc PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.826e-11
Identity = 61/237 (25.74%), Postives = 109/237 (45.99%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD--LQKLWMIFRGLL----------EPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            + Y F N   L +ALTH S   + + +RLEF+GD+ L  A+   +F  +P+ + G+LS +RA  +  + LA +A K G  ++++  A  L                     G  +   +L+D VE+I AAIY+D   D  + ++ + ++ LL          +P   L+E  Q  +     +++    G+     H +  +       ++  F+   +S +K  A+ NAA + L KL
Sbjct:   10 LGYQFTNLDYLLQALTHRS-AGAKNNERLEFLGDSILNFAIGKALFEKFPKANEGELSRMRATLVREQTLAILARKFGLGEYMKLGAGELK-------------------SGGYRRESILSDCVEAIIAAIYLDAGMDKAIAQVHLWYQDLLAEMKPGDAQKDPKTRLQEFLQGRKLPLPTYEVLNIKGE----AHNQTFKVTCKIEMLEEIFIGIGTSRRK--AEQNAAEQVLAKL 220          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICTY (Ribonuclease 3 OS=Rickettsia typhi GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 53/197 (26.90%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E ++ Y+FKNK LL EAL+H S      Y     Y+RLEF+GDA L L ++  +F  +     G L+ +R+  +  E +  V  K           A  D  +    E V+         G    P  + ++ E++ AAIY+D + +     ++KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFKNFENYKEGNLAKIRSYLVCKETICIVGTK----------LALKDYIIMTHGEEVA---------GGRDNPNNIENVTEALIAAIYLDSNIEITHNIIEKLWAEFMKVQNLTDYDPKTALQEWAQASSNHLPIYRLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICFE (Ribonuclease 3 OS=Rickettsia felis GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 52/197 (26.40%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E ++ Y+FKNK LL EAL+H S      Y D   Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K     ++          +    E V+         G    P  + +  E++ AAIY+D + +     + KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVVTEILFKNFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYI----------IMTHGEEVA---------GGRDNPNNIENATEALIAAIYLDSNIETTRNIIGKLWAEFIKIQNLTDYDPKTALQEWAQASSHHLPIYRLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICCK (Ribonuclease 3 OS=Rickettsia canadensis (strain McKiel) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 53/197 (26.90%), Postives = 90/197 (45.69%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E ++ Y+FKNK LL EAL+H S      Y D+  Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K           A  D  +  + E V+         G    P  + +  E++ AAIY+D + +     + +LW  F  +      +P   L+E  Q       ++ L ++ G
Sbjct:    7 LEKLLGYSFKNKELLIEALSHPSLRQHHEYKDNKDYERLEFLGDAVLNLVITKILFSNFASYNEGNLAKIRSYLVCKETICMVGAK----------LALKDYIIMTYGEEVA---------GGRDNPNNIENATEALIAAIYLDSNIETTHNIIGQLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYCLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEPW (Ribonuclease 3 OS=Pseudomonas putida (strain W619) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 46/147 (31.29%), Postives = 70/147 (47.62%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID 560
            M  ++  +E  + Y FK++  +  ALTH SY    + +RLEF+GDA L       +F  +PQ   GQLS LRA  +  E LAR+A      +++R  +  L                     G  +   +LAD +E++  AIY+D D
Sbjct:    1 MSASLARLERKLGYTFKDQDQMVLALTHRSYAGRNN-ERLEFLGDAILNFVAGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGEYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYLDAD 127          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEE4 (Ribonuclease 3 OS=Pseudomonas entomophila (strain L48) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDID 560
            +E  + Y FKN+  +  ALTH SY    + +RLEF+GDA L   +   +F  +PQ   GQLS LRA  +  E LAR+A       ++R  +  L                     G  +   +LAD +E++  AIY D D
Sbjct:    8 LERKLGYTFKNQDQMLLALTHRSYAGRNN-ERLEFLGDAILNFVVGEALFERFPQAREGQLSRLRARLVKGETLARLARGFDLGDYLRLGSGELK-------------------SGGFRRESILADALEALIGAIYQDAD 127          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_BORBR4.460e-1130.28Ribonuclease 3 OS=Bordetella bronchiseptica GN=rnc... [more]
RNC_NEIMB5.826e-1125.93Ribonuclease 3 OS=Neisseria meningitidis serogroup... [more]
RNC_FRATW5.826e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. tu... [more]
RNC_BUCAP5.826e-1123.11Ribonuclease 3 OS=Buchnera aphidicola subsp. Schiz... [more]
RNC_ACTPJ5.826e-1125.74Ribonuclease 3 OS=Actinobacillus pleuropneumoniae ... [more]
RNC_RICTY7.608e-1126.90Ribonuclease 3 OS=Rickettsia typhi GN=rnc PE=3 SV=... [more]
RNC_RICFE7.608e-1126.40Ribonuclease 3 OS=Rickettsia felis GN=rnc PE=3 SV=... [more]
RNC_RICCK7.608e-1126.90Ribonuclease 3 OS=Rickettsia canadensis (strain Mc... [more]
RNC_PSEPW7.608e-1131.29Ribonuclease 3 OS=Pseudomonas putida (strain W619)... [more]
RNC_PSEE47.608e-1132.86Ribonuclease 3 OS=Pseudomonas entomophila (strain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
back to top