DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_PSEA7 (Ribonuclease 3 OS=Pseudomonas aeruginosa (strain PA7) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 57/188 (30.32%), Postives = 86/188 (45.74%), Query Frame = 3
Query:  120 MEDAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            M + +  +E  + Y FK++ L+  ALTH SY    + +RLEF+GDA L   +   +F  +PQ   GQLS LRA  +  E LA +A   GF             +V ++    S E    +  G  +   +LAD +E++  AIY+D   D  +   I   L   +  L  +     P T L +  Q  G
Sbjct:    1 MSNPLDRLERKLGYTFKDQDLMVLALTHRSYAGRNN-ERLEFLGDAILNFVIGEALFHHFPQAREGQLSRLRARLVKGETLALLA--RGF-------------EVGDYLRLGSGE----LKSGGFRRESILADAMEALIGAIYLDTGMDSAR-ERIIAWLGPQLRELTPVDTNKDPKTRLQEFLQSRG 167          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LEGPH (Ribonuclease 3 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 45/136 (33.09%), Postives = 68/136 (50.00%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            +NY+F N   L++ALTH S   S +Y+R EF+GD+ L   ++N +F  +P    GQLS LR+  +  E LA +A  +  G Y F+                         +  G  +   +LAD +E+I AAIY+D
Sbjct:   12 LNYHFNNIAYLKQALTHCS-AGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGEMLAEIAREIDLGDYLFLGQG---------------------ELRSGGFRRTSILADALEAILAAIYLD 125          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LEGPC (Ribonuclease 3 OS=Legionella pneumophila (strain Corby) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            +NY+F N   L++ALTH S   S +Y+R EF+GD+ L   ++N +F  +P    GQLS LR+  +  E LA +A + G   ++      L                     G  +   +LAD +E+I AAIY+D
Sbjct:   12 LNYHFNNIAYLKQALTHCS-AGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGEL-------------------RSGGFRRTSILADALEAILAAIYLD 125          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LEGPA (Ribonuclease 3 OS=Legionella pneumophila (strain Paris) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 44/134 (32.84%), Postives = 67/134 (50.00%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVD 554
            +NY+F N   L++ALTH S   S +Y+R EF+GD+ L   ++N +F  +P    GQLS LR+  +  E LA +A + G   ++      L                     G  +   +LAD +E+I AAIY+D
Sbjct:   12 LNYHFNNIAYLKQALTHCS-AGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQLSRLRSFLVKGEMLAEIAREIGLGDYLFLGQGEL-------------------RSGGFRRTSILADALEAILAAIYLD 125          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_HELHP (Ribonuclease 3 OS=Helicobacter hepaticus GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 64/244 (26.23%), Postives = 109/244 (44.67%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVA--VKHGFYKFV---------RHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            +E  + Y F+N++LL EALTH S     + +RLEF+GDA L L +  Y+F  +P    G+LS LRA  ++ +   ++A  +  G Y ++         R  A+ L +  +    A+  E +            ++ D++E      Y  I  DL  L+M ++  L+ I   +    +    TL+ +    + K  +I           ++ V G   A AS   K+ A+  +A+ A  KL   M
Sbjct:   13 LEKKLGYVFQNQQLLLEALTHKSCKKQYNNERLEFLGDAVLDLLVGEYLFKKFPLAKEGELSKLRACIVNEKGFMKLAQSLDLGAYLYISQSEENNNGRQKASILSNAFEALIGAIYLESSLTY------VQSIIYDLLE------YNYIKIDLDSLFMDYKTALQEIT--QAFYGEIPTYTLISESGPDHKKSFEI-----------ALSVQGKEYARASGNSKKEAQQKSAQIAYKKLYSKM 231          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRATT (Ribonuclease 3 OS=Francisella tularensis subsp. tularensis GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFIDLAEGKLSQLRSKLVKGATLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_FRAT1 (Ribonuclease 3 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 47/139 (33.81%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  147 NIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDF 563
            NI+ YNFK+  LL  ALTH S T   +Y+RLEF+GD+ L   ++  ++  +  L  G+LS LR+  +    LA++A           S+  +D+ +     A  Q        G  K  K+L D+ E++  AIY+D DF
Sbjct:   10 NILGYNFKDYTLLIRALTHRSKTKK-NYERLEFLGDSVLSFVIAEVLYKQFIDLAEGKLSQLRSKLVKGATLAQLA-----------SSLKMDEYI--ILGASEQ--------GGHKREKILEDVFEAVIGAIYLDSDF 126          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_AQUAE (Ribonuclease 3 OS=Aquifex aeolicus GN=rnc PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.608e-11
Identity = 59/240 (24.58%), Postives = 106/240 (44.17%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP--IVTLEELQQQPQPVTLLFKLCQKNGKQ------VDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQS 836
            +E  + Y FK+K LLE+ALTH SY+    Y+ LEF+GDA +   + + +    P    G LS L+A  IS E    +A K   +KF+R     +++                          ++ D+ E++ AA+Y+D   D      +F  L +   +  ++E + +    T+L ++ QK  K+      + ++     +K I    +   +      + K+ A+  AA E +  L +S
Sbjct:    7 LEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINE-------------------------TIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIK-EYRTLGEGKSKKEAEQRAAEELIKLLEES 220          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICRS (Ribonuclease 3 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rnc PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 51/197 (25.89%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E +++Y+FKNK LL EAL+H S      Y D   Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K     ++          +    E     DN             + +  E++ AAIY+D + +     ++KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYI---------IMTHGEEVAGGRDNL----------NNIENATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICRO (Ribonuclease 3 OS=Rickettsia rickettsii (strain Iowa) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 51/197 (25.89%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E +++Y+FKNK LL EAL+H S      Y D   Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K     ++          +    E     DN             + +  E++ AAIY+D + +     ++KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYI---------IMTHGEEVAGGRDNL----------NNIENATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIKREG 184          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_PSEA77.608e-1130.32Ribonuclease 3 OS=Pseudomonas aeruginosa (strain P... [more]
RNC_LEGPH7.608e-1133.09Ribonuclease 3 OS=Legionella pneumophila subsp. pn... [more]
RNC_LEGPC7.608e-1132.84Ribonuclease 3 OS=Legionella pneumophila (strain C... [more]
RNC_LEGPA7.608e-1132.84Ribonuclease 3 OS=Legionella pneumophila (strain P... [more]
RNC_HELHP7.608e-1126.23Ribonuclease 3 OS=Helicobacter hepaticus GN=rnc PE... [more]
RNC_FRATT7.608e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. tu... [more]
RNC_FRAT17.608e-1133.81Ribonuclease 3 OS=Francisella tularensis subsp. tu... [more]
RNC_AQUAE7.608e-1124.58Ribonuclease 3 OS=Aquifex aeolicus GN=rnc PE=1 SV=... [more]
RNC_RICRS9.937e-1125.89Ribonuclease 3 OS=Rickettsia rickettsii (strain Sh... [more]
RNC_RICRO9.937e-1125.89Ribonuclease 3 OS=Rickettsia rickettsii (strain Io... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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