DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICPU (Ribonuclease 3 OS=Rickettsia peacockii (strain Rustic) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 51/197 (25.89%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E +++Y+FKNK LL EAL+H S      Y D   Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K     ++          +    E     DN             + +  E++ AAIY+D + +     ++KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYI---------IMTHGEEVAGGRDNL----------NNIENATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICM5 (Ribonuclease 3 OS=Rickettsia massiliae (strain Mtu5) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 51/197 (25.89%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E +++Y+FKNK LL EAL+H S      Y D   Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K     ++          +    E     DN             + +  E++ AAIY+D + +     ++KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFRNFANYNEGHLAKIRSYLVCKETICMVGAKLTLKNYI---------IMTHGEEVAGGRDNL----------NNIENATEALIAAIYLDSNIETTYDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_RICAE (Ribonuclease 3 OS=Rickettsia africae (strain ESF-5) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 51/197 (25.89%), Postives = 89/197 (45.18%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS------YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFD-----LQKLWMIFRGL-----LEPIVTLEELQQQPQPVTLLFKLCQKNG 683
            +E +++Y+FKNK LL EAL+H S      Y D   Y+RLEF+GDA L L ++  +F  +   + G L+ +R+  +  E +  V  K     ++          +    E     DN             + +  E++ AAIY+D + +     ++KLW  F  +      +P   L+E  Q       +++L ++ G
Sbjct:    7 LEKLLSYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGDAVLNLVITEILFRNFANYNEGNLAKIRSYLVCKETICMVGAKLTLKNYI---------IMTHGEEVAGGRDNL----------NNIENATEALIAAIYLDSNIETTHDIIEKLWAEFIKVQNLTDYDPKTALQEWAQASDHHLPIYRLIKREG 184          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_NEIG1 (Ribonuclease 3 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rnc PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.937e-11
Identity = 63/243 (25.93%), Postives = 108/243 (44.44%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQP-VTLLFKLCQ-------KNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSMPV 845
            ++  + Y F++  LL  ALTH S+  +   +R EF+GD+ L   ++  +F A+P+L  G+LS LRA+ ++   LA +A +      +   A  L                        + P +LAD +E++ AA+  D DF+  +   + R L    V   + Q Q +   T L +  Q       K   +  I H   +   I+    +  FV  A    ++ A+  AA+EAL  L + +P+
Sbjct:   14 IQKKLGYAFRDMSLLRRALTHRSH-HAKHNERFEFVGDSILNYTVARMLFDAFPKLTEGELSRLRASLVNEGVLAEMAAEMNVGDGLYLGAGELK-------------------SSGFRRPSILADAMEAMFAAVSFDADFNTAE--KVVRHLFAERVRRADFQNQAKDGKTALQEALQARRFALPKYRIEEQIGHADDSMFVISCDLGELGFVCRAKGTSRKAAEQEAAKEALKWLEEKLPL 234          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_RICPU9.937e-1125.89Ribonuclease 3 OS=Rickettsia peacockii (strain Rus... [more]
RNC_RICM59.937e-1125.89Ribonuclease 3 OS=Rickettsia massiliae (strain Mtu... [more]
RNC_RICAE9.937e-1125.89Ribonuclease 3 OS=Rickettsia africae (strain ESF-5... [more]
RNC_NEIG19.937e-1125.93Ribonuclease 3 OS=Neisseria gonorrhoeae (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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