DY262448

Overview
NameDY262448
Unique NameDY262448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1334
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_CAMFF (Ribonuclease 3 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rnc PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.026e-15
Identity = 72/246 (29.27%), Postives = 116/246 (47.15%), Query Frame = 3
Query:  126 DAVFYVENIINYNFKNKRLLEEALTHSSYTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEP--------------IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREAL 818
            D +  +E  + Y FKNK LL+EALTH S   S + +RLEF+GDA L L +  Y+F  +   D G LS LRAA ++ +  A ++ +     F+  SAA               EDN          P +++D +E++  AIY  ++  L+ +  IF  LLE                 TL+E+ Q    VT  ++L   +G          ++K+   +V+++   +A A    K+ A+ +AA + L
Sbjct:    2 DKLNRLEEHLGYKFKNKTLLKEALTHKSMKSSVNNERLEFLGDAVLDLIVGEYLFFKFKDTDEGNLSKLRAALVNEKSFASISSQIRLGDFLYLSAA---------------EDN----NNGRNKPSLVSDALEALMGAIY--LESGLEAVKKIFINLLESQYNNIDLQSLGKDYKTTLQEITQARFGVTPRYELVSSSGPD--------HKKSFEMAVFLNDKELARAIGNSKKEAEQSAAWKVL 218          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_ASPTN (Dicer-like protein 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dcl1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.026e-15
Identity = 72/250 (28.80%), Postives = 122/250 (48.80%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSSYTDSTS----YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAE----AVSQEDNTAVYGGSIK-APKV-LADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLF-KLCQKNG------KQVDIKHWRKNRKNI-ASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            VE  + Y+F+  RLL  A TH SY  + +    YQ LEF+GDA L +     +F  +P  DP  L+  + A +S + L  +AVK G +  + + ++AL  ++  +AE    A SQ D    Y    +  PKV L D+VE+   A++VD +F  +++ + F+  ++P    + + +      P T L  KL  + G      K  +I     +   + A+V V  + + +  +     AK+ A+  AL +L
Sbjct: 1238 VEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAAASQSDVAVDYWTLTQDPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMAIYDTFANRHPTTFLHNKLTNEYGCLNYCLKAGEIPGADGDASTVLAAVIVHDTILTTGVASSGRYAKVKASENALTEL 1487          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_MYCCT (Ribonuclease 3 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rnc PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.750e-15
Identity = 67/247 (27.13%), Postives = 120/247 (48.58%), Query Frame = 3
Query:  159 YNFK--NKRLLEEALTHSSYTDST----SYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM---IFRGLLEP--IVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRK---------NIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            YN K  ++++ +EALTH+SY +      SYQRLEF+GDA L + +S ++F  Y +L  G+L+ LR++ +  E L+R+A      + +R     L  K                     +   +LADI E++ AA+Y+D + D   +W+   +F+ + +P  I   ++ + + Q +        ++ K+ D+K+  +N +            SV +DG          K+ A+ NAA + L KL + +
Sbjct:   10 YNIKINDQQIYKEALTHNSYANERKLKYSYQRLEFLGDAILQMYVSKFLFFHYSKLGEGELTRLRSSTVREESLSRIAKDINLGQLIRLGHGELMTK-------------------GYEKQSILADIFEALTAAVYIDQNEDGLLIWLEQTLFKYMKDPTFINVTKDFKSELQELL-------QSEKRSDLKYIIENEEFFVNENKTLYTVSVNLDGQKFGVGKGYSKQEAEQNAASDCLSKLKKPL 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_ENTFA (Ribonuclease 3 OS=Enterococcus faecalis GN=rnc PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.750e-15
Identity = 66/240 (27.50%), Postives = 115/240 (47.92%), Query Frame = 3
Query:  165 FKNKRLLEEALTHSSYTDSTSY------QRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWM-----------IFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            F +  LLE+A THSSY +   Y      +RLEF+GDA L L +S Y++L +P+L  G+L+ +RAA +  + LA+ A +  F  ++      L  K +E +            GG  +A  +L D+ E+   A+Y+D      K ++            F   ++    L+E+ Q+   V++ ++L ++ G   D       R     VY++G  +     + K++A+ +AA  AL  + Q
Sbjct:   17 FHDVNLLEQAFTHSSYVNEHRYLKLSDNERLEFLGDAVLELIVSQYLYLKFPELPEGKLTKMRAAIVREDSLAKFAKECHFDNYI------LLGKGEEAS------------GGRTRA-SLLCDLFEAFLGALYLDQKVGAAKKFIEDVIFPKIDAGAFSHEMDHKTQLQEVLQRKGDVSIEYRLIKEEGPAHD-------RTFFTEVYMNGELIGLGQGKSKKLAEQDAAERALKSIPQ 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: DCL1_CRYPA (Dicer-like protein 1 OS=Cryphonectria parasitica GN=DCL-1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.750e-15
Identity = 74/293 (25.26%), Postives = 123/293 (41.98%), Query Frame = 3
Query:  141 VENIINYNFKNKRLLEEALTHSS----YTDSTSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQ-----EDNTAVYGGSIKA------------PKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPI---VTLEELQQQPQPVTLLFKL------CQKNG---KQVDIKH----WRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL--------AQSMPVNCDVCEIFDDIDE 884
            +     Y FK+ R+L  A  H S    +     YQRLEF+GDA   +A  +Y+F   P   P  L+  + A +S + L  +AV  GF+KF+ H  A++  ++ E+   +++     ED     G    A            PK + D++E+   AI+VD  +D   +   F   + P    + + +      PVT   +       C   G   +++ +K          + +A + + G  V  A  +    AK+ AAR+AL KL          +   +C   E  +DI E
Sbjct: 1251 IHEATGYQFKHPRVLRSAFRHPSRPYVFDKVPHYQRLEFLGDALFDMACVDYLFHIAPDEGPQWLTEHKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYVTEITEARRAAEDAAEAAGKPRSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFHAHVLPFFASMRMYDTFANKHPVTFFTQYVFETFGCHAYGLHAEEMPVKDDTGLVTGKTQVVAGILLHGQVVEGAVRDSGRYAKIAAARKALDKLRSMTRQEFLDAYKCDCKPGEAAEDISE 1543          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_LACS1 (Ribonuclease 3 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.286e-15
Identity = 63/238 (26.47%), Postives = 113/238 (47.48%), Query Frame = 3
Query:  156 NYNFKNKRLLEEALTHSSYTDSTS--------YQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVTLEELQQQPQPVTLLFKLCQKNGK------QVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKL 827
            N  FK+  LL+ A TH+SY + T         Y+R+EF+GDA + L +S Y++  YP++  G++S LRAA +  +  ++ A++  F +++R      ++K                 G + + P +L DI ES   A+Y+D   D  ++      ++ P + L          T L ++ Q+NG+      +V++      R    +V V+   +   +   K+ A+  AA +AL KL
Sbjct:   14 NITFKDVDLLDAAFTHASYVNETPERKKKLKYYERIEFLGDAVMQLCVSEYIYEHYPEMPEGKMSRLRAAMVRADSFSKFAIECHFNEYIRLGKG--EEK-----------------GNARQRPSLLCDIFESFIGALYLDQGKD--EVVRFISKVIFPKLELGWFDHMMDNKTELQEVLQQNGECKIKYNEVNVTGPDNERVYTMNVVVNNEVMGEGTGRTKKAAEQMAAYQALKKL 230          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACHK (Ribonuclease 3 OS=Bacillus thuringiensis subsp. konkukian GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACCR (Ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWEFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNVEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACCQ (Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/248 (27.82%), Postives = 114/248 (45.97%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQSM 839
            I   F +++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y  +D  L+ +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL + +
Sbjct:   26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALY--LDQGLETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNNVALGLGSGKSKKEAEQQAAAEALKKLKEQL 245          
BLAST of DY262448 vs. ExPASy Swiss-Prot
Match: RNC_BACCN (Ribonuclease 3 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=rnc PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.985e-15
Identity = 69/246 (28.05%), Postives = 112/246 (45.53%), Query Frame = 3
Query:  153 INYNFKNKRLLEEALTHSSYTDS------TSYQRLEFIGDAALGLALSNYVFLAYPQLDPGQLSLLRAANISTEKLARVAVKHGFYKFVRHSAAALDDKVKEFAEAVSQEDNTAVYGGSIKAPKVLADIVESIAAAIYVDIDFDLQKLWMIFRGLLEPIVT-------------LEELQQQPQPVTLLFKLCQKNGKQVDIKHWRKNRKNIASVYVDGSFVASASSEQKEIAKLNAAREALXKLAQ 833
            +   F N++LL +A THSSY +          +RLEF+GDA L L +S Y+F  YP +  G+L+ LRAA +    L R A +  F   V      L  K +E               G  + P +LAD+ E+   A+Y+D   D   +W   + ++ P +              L+EL Q+     + +++ Q+ G          NR+ ++ V ++   +   S + K+ A+  AA EAL KL +
Sbjct:   26 LGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLV------LLGKGEEMT-------------GGRERPALLADVFEAFIGALYLDQGLD--TVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGP-------AHNREFVSRVTLNSVALGLGSGKSKKEAEQQAAAEALRKLKE 243          
The following BLAST results are available for this feature:
BLAST of DY262448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 214
Match NameE-valueIdentityDescription
RNC_CAMFF1.026e-1529.27Ribonuclease 3 OS=Campylobacter fetus subsp. fetus... [more]
DCL1_ASPTN1.026e-1528.80Dicer-like protein 1 OS=Aspergillus terreus (strai... [more]
RNC_MYCCT1.750e-1527.13Ribonuclease 3 OS=Mycoplasma capricolum subsp. cap... [more]
RNC_ENTFA1.750e-1527.50Ribonuclease 3 OS=Enterococcus faecalis GN=rnc PE=... [more]
DCL1_CRYPA1.750e-1525.26Dicer-like protein 1 OS=Cryphonectria parasitica G... [more]
RNC_LACS12.286e-1526.47Ribonuclease 3 OS=Lactobacillus salivarius subsp. ... [more]
RNC_BACHK2.985e-1527.82Ribonuclease 3 OS=Bacillus thuringiensis subsp. ko... [more]
RNC_BACCR2.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain ATCC 145... [more]
RNC_BACCQ2.985e-1527.82Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=r... [more]
RNC_BACCN2.985e-1528.05Ribonuclease 3 OS=Bacillus cereus subsp. cytotoxis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AA07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262448 ID=DY262448; Name=DY262448; organism=Citrus clementina; type=EST; length=1334bp
CTGACTCATTGTTTCTCTCAAAAATAATGAACCCCGAGTCCTTCACGCTC
CCACGCGCCACCGTCACCGATTACCGGCTGCTGAAGGAGGCGATGCTAAC
CTCCCTCCCGTCTCCCGAGATGGAAGACGCAGTTTTCTACGTGGAGAACA
TCATCAACTACAACTTCAAAAACAAACGCCTCCTCGAAGAAGCCTTGACG
CACTCCTCGTACACCGATTCGACGTCGTATCAGCGGCTCGAGTTCATTGG
CGATGCCGCCTTGGGCTTGGCCTTGAGTAATTATGTGTTCTTGGCTTACC
CTCAGTTGGATCCTGGACAGCTGTCGCTTCTACGCGCCGCCAATATTAGT
ACCGAGAAATTAGCGCGCGTGGCCGTCAAGCACGGATTTTATAAGTTCGT
CAGACACAGTGCTGCTGCTCTTGATGATAAGGTTAAGGAATTTGCCGAAG
CAGTGAGCCAAGAAGATAATACGGCTGTGTATGGTGGATCAATAAAAGCA
CCAAAGGTTCTTGCCGATATTGTTGAATCCATAGCGGCTGCAATTTACGT
AGACATTGATTTTGATCTCCAAAAGCTCTGGATGATCTTTAGGGGTCTTT
TAGAGCCAATTGTAACCCTTGAAGAATTACAGCAACAGCCCCAACCAGTT
ACACTATTGTTTAAGTTATGTCAGAAAAATGGAAAGCAAGTTGATATCAA
GCACTGGAGAAAGAACAGAAAAAATATTGCCAGTGTATACGTGGACGGCA
GTTTTGTAGCCTCGGCTTCTTCTGAGCAGAAGGAAATTGCTAAGCTTAAT
GCTGCAAGGGAAGCTTTGGNAAAGTTAGCACAATCAATGCCAGTTAATTG
TGATGTCTGTGAAATTTTTGATGATATTGATGAGAAGTTTGAGATTGAAG
CAGCCAAACAGAAATTGCATGAACTCTGNCGAAAAGAGAAGTGGGCCCAA
ACCAGTTTACAGATTGAGAAAGATGANGGTCCTCACATGATAAGAAATTA
TGTCTGCAGTTCAAATGCACCTACAGATGGTGTGCTTTTTATCAGGGGAG
TGAAAAATCAAAAGTAAAGGAGCAAAAGATTTCGCGCCTTCATGAGGTTT
CCTGCCCTGCGGGAATCCCCTATCTTTGCCAAAAGGATGAAAGGGAAATA
AAACCCCCTATCCCCTGAAAGGAAATGGGCGTTGGGTCACCAAAAAACAC
CCGGGCCAGACCCGGGTCCCGAAAAAAAATTAAAAAATATTTTTTTTCCT
CCCTTTGGGTGGTTGGTGGTGGTCGCGGAGCGAAAGACCCAGAGAGAATC
CCCCCCGCGGATCGAGTATTTTGTGTTGTGTTTT
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