DY262842

Overview
NameDY262842
Unique NameDY262842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_SILST (Ribose-5-phosphate isomerase A OS=Silicibacter sp. (strain TM1040) GN=rpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.723e-37
Identity = 92/220 (41.82%), Postives = 137/220 (62.27%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDL---FEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            D+ K +AA +A E VE GM +GLGTGSTA   V  +GE++R+  L  I G+PTS +T E A  +GI L  LD    +DL IDGADE D  +NL+KG GG+LL+EK+V  A  + VVI D++K V  LG     +P+EV+P+ W+ +   +++     +  G  + LR  G  P+VTD GN+++DL+L + IG+ +  A     +P  V++ +F+D+  TV
Sbjct:    9 DKAKFVAAKRAAELVEDGMRVGLGTGSTAAWLVRCLGEMVREDGL-KITGVPTSARTAELAREVGIELITLDEARWLDLTIDGADEFDSELNLIKGGGGALLQEKIVATASDQMVVIADKAKEVETLG--AFPLPIEVIPFGWQTSQALVEETLISMDVMGRSSTLRMNGASPYVTDEGNHILDLHLNR-IGNPRQLALVLNQIPGVVENGLFIDICDTV 224          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHOP2 (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain HaA2) GN=rpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.723e-37
Identity = 89/223 (39.91%), Postives = 137/223 (61.43%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRT---TGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            + +++LK+ AA +A++ V  GM +GLGTGSTAKH V+ +GE +R G   +++G+PTS+ T   A   GI L+ LD    +DL +DGADE+DP + L+KG GG+LLREK+V  A  + +VI DE+K V  LG     +PVEV+P+    T + ++    + G   +L+         FVTD G+++ID +L + I D    A     +P  V+H +F+ +A+TV
Sbjct:    1 MNKEDLKRQAAARALDEVRDGMKIGLGTGSTAKHFVELLGEKVRAG--LDVIGVPTSEVTRADAERCGIRLTTLDEIDRLDLTVDGADEIDPRLELIKGGGGALLREKIVAAASDRMIVIADETKWVDCLG--HFPLPVEVIPFGLAATRRAIEQACAEVGASGRLQLREGKDGHAFVTDGGHWIIDAHLGR-IPDAPRLAQLLSAIPGVVEHGLFIGIASTV 218          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_BACWK (Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.723e-37
Identity = 81/179 (45.25%), Postives = 115/179 (64.25%), Query Frame = 1
Query:  310 LKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVID 846
            LK++A   A  FV  GM +GLGTGST    + ++G  +++G   +I  +PTSK+T   A  L IPL  L+   ++DL IDGADE++  + L+KG GG+LLREK+V  + K+ ++I DESKLV HLG     +P+E++ + WK T KR+Q L    GC   LR    +PF+TDNGN +ID
Sbjct:    4 LKQLAGEYAAGFVRDGMTIGLGTGSTVYWTIQKLGHRVQEG--LSIQAVPTSKETEVLAKQLSIPLISLNEIDILDLTIDGADEINNDLQLIKGGGGALLREKIVATSSKELIIIADESKLVSHLG--TFPLPIEIISFSWKQTEKRIQSL----GCETHLRMKDSRPFITDNGNLIID 174          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_LISMF (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.556e-37
Identity = 85/218 (38.99%), Postives = 137/218 (62.84%), Query Frame = 1
Query:  313 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTVDCSE 966
            KKIA  KA E+++ GMV+GLGTGST  + ++++GE++  G   +I G+ TS++T +QA +LGIPL  L+    +D+ IDGADE+D     +KG GG+LLREKMV  A  K + +V E KLV +LG     +P+EV+P+ WK   + L+   E    + + +++GE  +VT+NGNY++D+ + +   D ++       +P  V+H +FL     + C++
Sbjct:    5 KKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWKQIERTLEK--EHIQTILRRQSSGE-IYVTNNGNYILDI-VNQTFRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAK 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_LISMC (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpiA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.556e-37
Identity = 85/218 (38.99%), Postives = 137/218 (62.84%), Query Frame = 1
Query:  313 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTVDCSE 966
            KKIA  KA E+++ GMV+GLGTGST  + ++++GE++  G   +I G+ TS++T +QA +LGIPL  L+    +D+ IDGADE+D     +KG GG+LLREKMV  A  K + +V E KLV +LG     +P+EV+P+ WK   + L+   E    + + +++GE  +VT+NGNY++D+ + +   D ++       +P  V+H +FL     + C++
Sbjct:    5 KKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPIEVIPFGWKQIERTLEK--EHVQTILRRQSSGE-IYVTNNGNYILDI-VNQTFRDAEMWQEKLAQIPGIVEHGLFLHYVDIIVCAK 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_LISMO (Ribose-5-phosphate isomerase A OS=Listeria monocytogenes GN=rpiA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.645e-37
Identity = 85/218 (38.99%), Postives = 138/218 (63.30%), Query Frame = 1
Query:  313 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTVDCSE 966
            KKIA  KA E+++ GMV+GLGTGST  + ++++GE++  G   +I G+ TS++T++QA +LGIPL  L+    +D+ IDGADE+D     +KG GG+LLREKMV  A  K + +V E KLV +LG     +P+EV+P+ WK   ++L+   E      + +++GE  +VT+NGNY++D+ + +   D ++       +P  V+H +FL     + C++
Sbjct:    5 KKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG--LHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLG--KFPLPLEVIPFGWKQVERKLEK--EHIQTNLRKQSSGE-VYVTNNGNYILDI-VNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAK 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_BACAN (Ribose-5-phosphate isomerase A OS=Bacillus anthracis GN=rpiA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.066e-37
Identity = 80/180 (44.44%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  307 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVID 846
            +LK+IA   A  FV+ GM +GLGTGSTA   + ++G+ +++G   +I  +PTSK+T   A  L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + K+ ++IVDESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR    + F+TDN N +ID
Sbjct:    2 DLKQIAGEYAATFVKDGMKIGLGTGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIVDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIID 173          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_LACRJ (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.923e-37
Identity = 89/220 (40.45%), Postives = 134/220 (60.91%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            + Q+ LK+    ++V++++SGM++GLGTGST K+ VD +G+ +++GK+ +I+G+ TS +T +QA  LGI + D+D    +DL IDGADE+      +KG GG+LL EK+V  A  K + IVDESKLV  LG     +PVEV+P    F ++ + D  E  G     R  G++ F TD  NY+IDL+L  +I D K  A     +   V+  +FL+    V
Sbjct:    1 MDQNALKEQTGKESVKYIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLG--AFPLPVEVIP----FGSQHVFDRLEKKGYKPTWRMDGDKKFRTDENNYIIDLHL-GEIDDPKALADELIHMVGIVETGLFLNRVNDV 213          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_LACRD (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain DSM 20016) GN=rpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.923e-37
Identity = 89/220 (40.45%), Postives = 134/220 (60.91%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            + Q+ LK+    ++V++++SGM++GLGTGST K+ VD +G+ +++GK+ +I+G+ TS +T +QA  LGI + D+D    +DL IDGADE+      +KG GG+LL EK+V  A  K + IVDESKLV  LG     +PVEV+P    F ++ + D  E  G     R  G++ F TD  NY+IDL+L  +I D K  A     +   V+  +FL+    V
Sbjct:    1 MDQNALKEQTGKESVKYIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLG--AFPLPVEVIP----FGSQHVFDRLEKKGYKPTWRMDGDKKFRTDENNYIIDLHL-GEIDDPKALADELIHMVGIVETGLFLNRVNDV 213          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_BACCZ (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.923e-37
Identity = 79/180 (43.89%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  307 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVID 846
            +LK+IA   A  FV+ GM +GLGTGSTA   + ++G+ +++G   +I  +PTSK+T   A  L IPL  L+    +DL IDGADE+D  + L+KG GG+LLREK+V  + K+ ++I+DESK+V  LG     +P+E++P+ WK T  ++Q L    GC   LR    + F+TDN N +ID
Sbjct:    2 DLKQIAGEYAATFVKDGMKIGLGTGSTAYWTIQKLGQRVKEG--LSIQAVPTSKETEALAQQLNIPLISLNDVQSLDLTIDGADEIDSNLQLIKGGGGALLREKIVASSSKELIIIIDESKVVTRLG--TFPLPIEIIPFAWKQTESKIQSL----GCQTTLRLKNNETFITDNNNMIID 173          
The following BLAST results are available for this feature:
BLAST of DY262842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_SILST2.723e-3741.82Ribose-5-phosphate isomerase A OS=Silicibacter sp.... [more]
RPIA_RHOP22.723e-3739.91Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_BACWK2.723e-3745.25Ribose-5-phosphate isomerase A OS=Bacillus weihens... [more]
RPIA_LISMF3.556e-3738.99Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMC3.556e-3738.99Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_LISMO4.645e-3738.99Ribose-5-phosphate isomerase A OS=Listeria monocyt... [more]
RPIA_BACAN6.066e-3744.44Ribose-5-phosphate isomerase A OS=Bacillus anthrac... [more]
RPIA_LACRJ7.923e-3740.45Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]
RPIA_LACRD7.923e-3740.45Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]
RPIA_BACCZ7.923e-3743.89Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AD10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262842 ID=DY262842; Name=DY262842; organism=Citrus clementina; type=EST; length=1315bp
CGCCACCCTCCCTTTTCTTTCTTCCCCTCTCTCTCTAGAGTCTCTATAAA
TAAGACCCTTTCTGGCTTTCTCATCCACACGCATTCACAACCATCCAATC
CCAATCCCTCCTCTCCCATTCAGAAGTAAAAAAAAAAAACTCTTCATTCA
ATCTTTTCATCAAACACCCCGCTGTTTCTCTTAACATTCCTCTGAATCCC
CTTCCCTGTAGAAATGGCTATCGCTATTTCTGCAGAGAAACTGTCTTCTG
TGGAGACTGGTTTGTCTCCTTTATCTTCCCCTCCGCCGGTGATTCTGACC
CAAGACGAGCTCAAGAAGATTGCTGCTTACAAGGCCGTTGAGTTTGTCGA
ATCCGGGATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCAAGCACGCCG
TTGACAGAATCGGCGAGTTGTTGCGCCAAGGCAAGCTCACCAACATTGTG
GGGATACCCACCTCCAAGAAGACTCACGAACAGGCCGTTTCGCTCGGTAT
TCCTCTCTCAGATCTTGACTCGTATCCCGTCGTTGATTTGGCAATCGACG
GCGCTGACGAAGTCGATCCCTTCATGAATTTGGTCAAAGGCCGGGGTGGG
TCCTTGTTGAGGGAGAAGATGGTGGAGGGTGCCTGTAAGAAGTTTGTTGT
TATTGTCGACGAGTCCAAGCTGGTGCCTCATCTCGGAGGGAGCGGCCTGG
CCATGCCCGTTGAAGTGGTGCCGTACTGTTGGAAGTTTACGGCCAAGAGG
CTTCAGGATTTGTTTGAGGATTGTGGCTGTGTTGCCAAGCTCAGAACCAC
CGGTGAGCAGCCGTTTGTCACCGATAATGGCAACTACGTTATTGATTTGT
ATTTGAAGAAAGACATTGGCGATTTGAAAGTGCAAGCGACAACATTTTGC
GGCTTGCCGGTGTTTGTGAAGCACCGGATGTTTCTTGATATGGCTACAAC
TGTGGATTGTAGCGAGCGAGCTCGGCGTTACATTAAGAAAAAAAAATGAT
TTTTTTTTAATTTTTAATTTTAAACGGGTCAAGTCTAATTCCCAAGTGAA
TTTGGGGCACATTGGCTTGGGTAAACAAAAAAAAAAAAGGGAATTTTGGG
GGCCATTTTTTAAAGAAATGGAGAAATTCCCCGGTAATAAAGAGGGACCT
TCAAAATTTTTTTTTGAAAAAATTATAAAAAAAGAAATAAAGGGGAATTT
CTAAAAAAAAAAATAAAAGGAGAAAAAGGAAAAAAAGGGGGGAAACAAAA
AAATATAACTTTTTTTTTTTTTTTTTAAAAGAAATATATTTTCCTCTGGT
GTTTTAAAATATAAA
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