DY262842

Overview
NameDY262842
Unique NameDY262842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_SYNR3 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain RCC307) GN=rpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.707e-36
Identity = 91/220 (41.36%), Postives = 129/220 (58.64%), Query Frame = 1
Query:  301 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            Q ++K+  A  A + V++GMVLGLG+GSTA   +  +G  LR G+LT+IVG+ TS +    A  LGIPL  L++   +DLAIDGADEVDP   L+KG G   ++EK+V    ++FVV+VD +KLV  L   G  +PVEV+   W+     LQ L    G  A+LR    +  P VTD GN V+D+     I D     TT   +P  +++ +F+ +A  V
Sbjct:    5 QTQMKQAVALAATDQVKNGMVLGLGSGSTAALMIQEVGARLRDGRLTDIVGVTTSFQGEVLAAELGIPLQSLNAIDRIDLAIDGADEVDPAFELIKGGGACHVQEKLVARRAERFVVVVDSTKLVERL-NLGFLLPVEVLAGAWRQVQAELQQL----GGSAELRMAQRKAGPVVTDQGNLVLDVSFAGGINDPAGLETTINNIPGVLENGLFVGLADQV 219          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHOS4 (Ribose-5-phosphate isomerase A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.707e-36
Identity = 91/220 (41.36%), Postives = 133/220 (60.45%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK---LRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            D  K  AA +AV+ V+ GM LGLGTGSTA   V  + E +R+  L  + G+PTS +T E A +LGI +  LD    +DL IDGADE D   NL+KG G +LL+EK+V  A  + VVI D +K V HLG     +PVEV+P+ W+ T   +++  E    + +   LR +G+ P +TD  NY++DL+LK+ IG+ +  A     +   V++ +F+D+  TV
Sbjct:    9 DTAKFAAARRAVDLVQDGMKLGLGTGSTAAWMVRCLAERVREEGL-RVQGVPTSTRTAELARALGIQVVTLDEAKWLDLTIDGADEFDADFNLIKGGGAALLQEKIVATASDRMVVIADAAKEVAHLG--AFPLPVEVIPFGWQSTKMLIEETLEGMDVLGREVTLRLSGDAPLLTDEKNYILDLHLKR-IGEPRPLALALNQIAGVVENGLFIDICDTV 224          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_METB6 (Ribose-5-phosphate isomerase A OS=Methanoregula boonei (strain 6A8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.707e-36
Identity = 85/209 (40.67%), Postives = 128/209 (61.24%), Query Frame = 1
Query:  313 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMF 933
            K+ A Y+A E VE GMV+GLGTGST  +A++ +   +R G   ++VG+PTS +T  +A   GIPL+ LD  PV+DLAIDGAD+ DP   L+KGRG ++ REK V  A  +F+V+VDE+K+V  L G    +PVE +P+  K    +L+ L    GC   +R   ++  P +TDNGN+++D    ++I D  +       +P  ++  +F
Sbjct:   12 KRAAGYQAAEMVEDGMVIGLGTGSTVFYAIECLSGRIRDG--LSVVGVPTSYQTAMKAREYGIPLTTLDDNPVLDLAIDGADQADPQFRLIKGRGAAITREKCVASAAFRFIVVVDEAKMVKKLAG---VVPVETLPFATKTALAQLRGL----GCRPFIREAVKKDGPVITDNGNFIVDCQF-EEIPDPALLEAGIAAIPGVIESGLF 210          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_JANSC (Ribose-5-phosphate isomerase A OS=Jannaschia sp. (strain CCS1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.707e-36
Identity = 89/216 (41.20%), Postives = 131/216 (60.65%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFED---CGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDM 942
            D  K +AA +AVE+VE GM +GLGTGSTA   V  +GEL+R   +  I G+ TS +T + A  +G+ +  LD    +DL IDG DE DP +NL+KG GG+LL EK+V  A  + VVI D +K V  LG     +PVEV+P+ W+ T   ++++  +    G  A LR +G +PF TD GN ++DL+L++ I      +     +P  V++ +FLD+
Sbjct:    9 DRAKYVAARRAVEYVEDGMRVGLGTGSTAAWMVRCLGELVRDEGM-QITGVATSTRTADLARDVGVTVKTLDDVRWLDLTIDGTDEYDPNLNLIKGGGGALLHEKVVATASDQMVVIADPTKQVDTLG--AFPLPVEVIPFGWQTTKALIEEMLSNLDVLGRSASLRLSGAEPFRTDEGNLILDLHLRR-IAQPAQLSLVLNQIPGVVENGLFLDI 220          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_GLOVI (Ribose-5-phosphate isomerase A OS=Gloeobacter violaceus GN=rpiA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 6.707e-36
Identity = 97/218 (44.50%), Postives = 132/218 (60.55%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVD-PFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            D LK+ AA +AVE VE GMV+GLGTGSTA  AV  + E +R G    +VGIPTS++T  QA + GI L  L     VDL IDGADEV    + L+KG GG+LLREK+V  A ++ ++IVD +KLV  LG  G  +PVEV P+ W+ TA+ L+ L    G    LR    Q F+TD G+Y++D          +++A     +P  V+  +F+ MA+ V
Sbjct:    4 DILKQTAARRAVELVEDGMVVGLGTGSTAAFAVSVLAERVRLG--LRVVGIPTSERTARQAEAEGIVLGTLAEQSRVDLTIDGADEVALGELALIKGLGGALLREKIVAAASERLIIIVDATKLVEQLGSHG-PLPVEVAPFGWQATARALERL----GAEVNLRAQHGQAFLTDGGHYILDCRFGPIARPAELEA-AIDRIPGVVESGLFVGMASAV 213          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHIE6 (Ribose-5-phosphate isomerase A OS=Rhizobium etli (strain CIAT 652) GN=rpiA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.760e-36
Identity = 89/215 (41.40%), Postives = 130/215 (60.47%), Query Frame = 1
Query:  307 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAK--LRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMA 945
            E+K  AA  A+  VE GM LG+GTGSTA+  V  + E +  G    + G+PTS++T    V LG+PL  LD  P +DL +DGADEVDP + L+KG GG+LLREK+V  A ++ +VI DESKLV  LG    A+P+EV P+    T   ++ +    G   +  LR +G+  F TD G+++ID    + I D +  ++    +P  V+H +F++MA
Sbjct:    5 EMKIKAAEAALAHVEDGMRLGIGTGSTAEEFVRLLAEKVAGG--FRVEGVPTSERTARLCVELGVPLKSLDELPALDLTVDGADEVDPALRLIKGGGGALLREKIVAAASERMIVIADESKLVDTLG--AYALPIEVNPFGLVSTRIAIEKVAARLGLSGELSLRQSGDGEFTTDGGHHIIDASFGR-IPDAEALSSELNSIPGVVEHGLFINMA 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_LISIN (Ribose-5-phosphate isomerase A OS=Listeria innocua GN=rpiA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 8.760e-36
Identity = 84/219 (38.36%), Postives = 135/219 (61.64%), Query Frame = 1
Query:  313 KKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR-TTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTVDCSE 966
            KKIA  KA E++E GMV+GLGTGST  + ++++GE++++G   NI G+ TS +T +QA +LGIPL  L+    +D+ IDGADE++     +KG GG+LLREKMV  A  K + +V E KLV  LG     +P+EV+P+ W    K+++ + E+ G    LR  +  + + T+NGNY++D+ + +   + +       G+P  ++H +FL     + C +
Sbjct:    5 KKIAGEKACEWIEDGMVVGLGTGSTVYYTIEKLGEMVQKG--LNITGVSTSIETEQQARTLGIPLKSLNDVTKIDVTIDGADEINQAFQGIKGGGGALLREKMVAQASSKNIWVVGEEKLVTELG--KFPLPLEVIPFGW----KQIKRMLENDGVETTLRKQSSGEIYETNNGNYILDI-INQTFTNPEAWHEKLAGIPGVLEHGLFLHYVDIIICGK 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRT1 (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpiA PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.144e-35
Identity = 97/218 (44.50%), Postives = 128/218 (58.72%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            DELKK+A   A  FVE GMV+GLGTGSTA   V+ IG  +++  L+ +VG+ TS +T +QA  LGIPL  +D    +D+ +DGADEVDP +N +KG GG+LL EK+V    KK++ +VDESK+V  LG     +PVEVV Y     A RL   FE  G     R T +   FVTD  N++IDL L K I +          +   V+H +F  M   V
Sbjct:    2 DELKKLAGVYAAGFVEDGMVVGLGTGSTAYFFVEEIGRRIKEEGLS-VVGVTTSSQTTKQAEGLGIPLKSVDDIDSIDVTVDGADEVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLG--AFKLPVEVVQY----GADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDLGK-INNPVALGDELKAMTGVVEHGLFNGMVNKV 211          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_THEEB (Ribose-5-phosphate isomerase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.494e-35
Identity = 90/218 (41.28%), Postives = 133/218 (61.01%), Query Frame = 1
Query:  307 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLR--TTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            ++K++ A  A + V+SGMV+GLGTGST    +  +G+ LR+G+L+NIVG+PTS +    A   GIPL  LD    +D+AIDGADEVDP  NL+KG G +  REK+V+   ++F+V+VD SKLV  L GS   +PVEV+P+      + L+ L    G   +LR     + P VTD GN+V+D+    DI D          +P  V++ +F+++A  +
Sbjct:    8 QMKQVVAKAAADRVQSGMVVGLGTGSTTAFVIQFLGDRLRKGELSNIVGVPTSFQASVLAKKYGIPLVTLDDVEKLDIAIDGADEVDPAKNLIKGGGAAHTREKIVDSLAEQFLVVVDSSKLVQKL-GSTFPVPVEVLPFAVAPVTRALKAL----GGEPELRMGVKKDGPVVTDQGNFVLDVRF-DDIPDPAELEKAINNIPGVVENGLFVNVADVI 219          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRTD (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.494e-35
Identity = 97/218 (44.50%), Postives = 128/218 (58.72%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGE-QPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            DELKK+A   A  FVE GMV+GLGTGSTA   V+ IG  +++  L+ +VG+ TS +T +QA  LGIPL  +D    +D+ +DGADEVDP +N +KG GG+LL EK+V    KK++ +VDESK+V  LG     +PVEVV Y     A RL   FE  G     R T +   FVTD  N++IDL L K I +          +   V+H +F  M   V
Sbjct:    2 DELKKLAGVYAAGFVEDGMVVGLGTGSTAYFFVEEIGRRIKEEGLS-VVGVTTSTQTTKQAEGLGIPLKSVDDIDSIDVTVDGADEVDPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLG--AFKLPVEVVQY----GADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDLGK-INNPVALGDELKAMTGVVEHGLFNGMVNKV 211          
The following BLAST results are available for this feature:
BLAST of DY262842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_SYNR36.707e-3641.36Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_RHOS46.707e-3641.36Ribose-5-phosphate isomerase A OS=Rhodobacter spha... [more]
RPIA_METB66.707e-3640.67Ribose-5-phosphate isomerase A OS=Methanoregula bo... [more]
RPIA_JANSC6.707e-3641.20Ribose-5-phosphate isomerase A OS=Jannaschia sp. (... [more]
RPIA_GLOVI6.707e-3644.50Ribose-5-phosphate isomerase A OS=Gloeobacter viol... [more]
RPIA_RHIE68.760e-3641.40Ribose-5-phosphate isomerase A OS=Rhizobium etli (... [more]
RPIA_LISIN8.760e-3638.36Ribose-5-phosphate isomerase A OS=Listeria innocua... [more]
RPIA_STRT11.144e-3544.50Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]
RPIA_THEEB1.494e-3541.28Ribose-5-phosphate isomerase A OS=Thermosynechococ... [more]
RPIA_STRTD1.494e-3544.50Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10AD10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262842 ID=DY262842; Name=DY262842; organism=Citrus clementina; type=EST; length=1315bp
CGCCACCCTCCCTTTTCTTTCTTCCCCTCTCTCTCTAGAGTCTCTATAAA
TAAGACCCTTTCTGGCTTTCTCATCCACACGCATTCACAACCATCCAATC
CCAATCCCTCCTCTCCCATTCAGAAGTAAAAAAAAAAAACTCTTCATTCA
ATCTTTTCATCAAACACCCCGCTGTTTCTCTTAACATTCCTCTGAATCCC
CTTCCCTGTAGAAATGGCTATCGCTATTTCTGCAGAGAAACTGTCTTCTG
TGGAGACTGGTTTGTCTCCTTTATCTTCCCCTCCGCCGGTGATTCTGACC
CAAGACGAGCTCAAGAAGATTGCTGCTTACAAGGCCGTTGAGTTTGTCGA
ATCCGGGATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCAAGCACGCCG
TTGACAGAATCGGCGAGTTGTTGCGCCAAGGCAAGCTCACCAACATTGTG
GGGATACCCACCTCCAAGAAGACTCACGAACAGGCCGTTTCGCTCGGTAT
TCCTCTCTCAGATCTTGACTCGTATCCCGTCGTTGATTTGGCAATCGACG
GCGCTGACGAAGTCGATCCCTTCATGAATTTGGTCAAAGGCCGGGGTGGG
TCCTTGTTGAGGGAGAAGATGGTGGAGGGTGCCTGTAAGAAGTTTGTTGT
TATTGTCGACGAGTCCAAGCTGGTGCCTCATCTCGGAGGGAGCGGCCTGG
CCATGCCCGTTGAAGTGGTGCCGTACTGTTGGAAGTTTACGGCCAAGAGG
CTTCAGGATTTGTTTGAGGATTGTGGCTGTGTTGCCAAGCTCAGAACCAC
CGGTGAGCAGCCGTTTGTCACCGATAATGGCAACTACGTTATTGATTTGT
ATTTGAAGAAAGACATTGGCGATTTGAAAGTGCAAGCGACAACATTTTGC
GGCTTGCCGGTGTTTGTGAAGCACCGGATGTTTCTTGATATGGCTACAAC
TGTGGATTGTAGCGAGCGAGCTCGGCGTTACATTAAGAAAAAAAAATGAT
TTTTTTTTAATTTTTAATTTTAAACGGGTCAAGTCTAATTCCCAAGTGAA
TTTGGGGCACATTGGCTTGGGTAAACAAAAAAAAAAAAGGGAATTTTGGG
GGCCATTTTTTAAAGAAATGGAGAAATTCCCCGGTAATAAAGAGGGACCT
TCAAAATTTTTTTTTGAAAAAATTATAAAAAAAGAAATAAAGGGGAATTT
CTAAAAAAAAAAATAAAAGGAGAAAAAGGAAAAAAAGGGGGGAAACAAAA
AAATATAACTTTTTTTTTTTTTTTTTAAAAGAAATATATTTTCCTCTGGT
GTTTTAAAATATAAA
back to top