DY262842

Overview
NameDY262842
Unique NameDY262842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1315
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRPM (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M28 GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.680e-34
Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 879
            + LKKIA   A ++V  GM +GLGTGSTA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  G+   VTD  NY+IDL    D+G +K
Sbjct:    2 EALKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIK 182          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRP8 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M18 GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.680e-34
Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 879
            + LKKIA   A ++V  GM +GLGTGSTA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  G+   VTD  NY+IDL    D+G +K
Sbjct:    2 EALKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKDFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIK 182          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRP3 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M3 GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.680e-34
Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 879
            + LKKIA   A ++V  GM +GLGTGSTA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  G+   VTD  NY+IDL    D+G +K
Sbjct:    2 EALKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKNFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIK 182          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRP1 (Ribose-5-phosphate isomerase A OS=Streptococcus pyogenes serotype M1 GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.680e-34
Identity = 87/192 (45.31%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLK 879
            + LKKIA   A ++V  GM +GLGTGSTA + V+ IG  ++Q  L  +VG+ TS  T +QA  LGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VD SK+V HLG     +PVEVV Y     A RL  +FE  G     R  G+   VTD  NY+IDL    D+G +K
Sbjct:    2 EALKKIAGVTAAQYVTDGMTIGLGTGSTAYYFVEEIGRRVKQEGL-QVVGVTTSSVTSKQAEVLGIPLKSIDDIDSIDLTVDGADEVDKNFNGIKGGGAALLMEKIVATPTKEYIWVVDASKMVEHLG--AFKLPVEVVQY----GADRLFRVFEKAGYKPSFRMKGDSRLVTDMQNYIIDL----DLGCIK 182          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_SINMW (Ribose-5-phosphate isomerase A OS=Sinorhizobium medicae (strain WSM419) GN=rpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.680e-34
Identity = 86/216 (39.81%), Postives = 128/216 (59.26%), Query Frame = 1
Query:  307 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL--RTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMAT 948
            ++K  AA  A+E VE+GM LG+GTGSTA+  V  + E +  G    I G+PTS++T    + LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  A  + +VI DE+K+V  LG     +P+EV P+    T   ++ +    G    +  R +G+ PF+TD G+ ++D    + I D    A     +P  V+H +F++MA+
Sbjct:    5 QMKIKAAEAALEHVENGMRLGIGTGSTAEEFVRVLAEKVASG--FQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASARMIVIADETKVVDVLG--AFKLPIEVNPFGQLATRLAIEKVASRLGLTGDIVVRASGDGPFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIEMAS 215          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_STRU0 (Ribose-5-phosphate isomerase A OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.278e-34
Identity = 84/185 (45.41%), Postives = 115/185 (62.16%), Query Frame = 1
Query:  304 DELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLK 858
            + LKK+A   A ++V+ GM++GLGTGSTA   V+ IG  + +  L  +VG+ TS  T +QA SLGIPL  +D    +DL +DGADEVD   N +KG G +LL EK+V    K+++ +VDESK+V  LG     +PVEVV Y     A+RL  +FE  G     R   +Q  +TD GN++IDL LK
Sbjct:    2 EALKKMAGVTAAQYVKDGMIVGLGTGSTAYFFVEEIGRRVNEEGL-QVVGVTTSSATTKQAESLGIPLKAVDEIDEIDLTVDGADEVDKEFNGIKGGGAALLMEKIVATPTKEYIWVVDESKMVEKLG--AFKLPVEVVQY----GAERLFRVFEKAGYNPSFRMKEDQKLITDMGNFIIDLDLK 179          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_RHIME (Ribose-5-phosphate isomerase A OS=Rhizobium meliloti GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.278e-34
Identity = 86/216 (39.81%), Postives = 128/216 (59.26%), Query Frame = 1
Query:  307 ELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKL--RTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMAT 948
            ++K  AA  A+E VESGM LG+GTGSTA+  V  + E +  G    I G+PTS++T    + LG+PL  LD  P +DL IDGADEVD  + L+KG GG+LLREK+V  A  + +VI DESK+V  LG     +P+E+ P+    T   ++      G   ++  R++G+  F+TD G+ ++D    + I D    A     +P  V+H +F+D+A+
Sbjct:    5 QMKIKAAEAALEHVESGMRLGIGTGSTAEEFVRLLAEKVASG--FQISGVPTSERTARLCLELGVPLKSLDELPELDLTIDGADEVDGKLRLIKGGGGALLREKIVASASTRMIVIADESKVVDVLG--AFKLPIEINPFGQVATRLAIEKTASRLGLAGEIVVRSSGDGVFMTDGGHLILDASFGR-IPDADALAVELNAIPGVVEHGLFIDVAS 215          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_PROMA (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.278e-34
Identity = 84/220 (38.18%), Postives = 124/220 (56.36%), Query Frame = 1
Query:  301 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            Q ++K   A +A+  ++ GM+LGLG+GSTA   +  +GE L++G L  I+G+PTS +    A  LGIPL    +   +DLAIDGADEVDP   L+KG G   ++EK+V     +FVV+VD +K+V  L      +PVEV+P  WK   K L DL    G  + LR   ++  P VTD GN V+D+     I D +         P  +++ +F+++   V
Sbjct:    5 QTQMKIAVAQEAIGEIKDGMILGLGSGSTAALMIKSLGEKLKEGSLKEIIGVPTSFQGEVLASQLGIPLRAFSAVSKIDLAIDGADEVDPNFQLIKGGGACHVQEKLVASIADRFVVVVDSTKIVEKL-NLEFKLPVEVLPAAWKLVQKELNDL----GAKSDLRMAEKKAGPIVTDQGNLVLDVQFADGISDPQNLEKQINNFPGVLENGLFVNLTDEV 219          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_DICDI (Ribose-5-phosphate isomerase OS=Dictyostelium discoideum GN=rpiA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 8.199e-34
Identity = 85/218 (38.99%), Postives = 128/218 (58.72%), Query Frame = 1
Query:  295 LTQDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGS-GLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQPFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDM 942
            ++ D  KK+AAYKAV+ FV+ G  +G+G+GST K+AVDRI EL     L N++ +PTS ++ +  V  G+ LSDL   P +D+ IDGADEVD   NL+KG GG  L+EK+V  + KK V++ D +K    LG +    +P+EVVP  +    K+L+          ++      P VTDNGN++ID    K + ++   A     +P  V+  +F++M
Sbjct:    1 MSLDNCKKVAAYKAVDDFVKDGCKIGIGSGSTIKYAVDRIKEL----GLKNVICVPTSFQSTQLIVEAGLELSDLSRTPELDITIDGADEVDKDFNLIKGGGGCQLQEKIVAYSSKKLVIVADHTKESTELGENWKKGIPIEVVPMAYVPVMKKLESSSFSLTPKLRMAVNKAGPVVTDNGNFIIDAQFSKPLSNIPQLAIDIKMIPGVVETGLFVNM 214          
BLAST of DY262842 vs. ExPASy Swiss-Prot
Match: RPIA_PROMT (Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus (strain NATL2A) GN=rpiA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.071e-33
Identity = 82/220 (37.27%), Postives = 130/220 (59.09%), Query Frame = 1
Query:  301 QDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLTNIVGIPTSKKTHEQAVSLGIPLSDLDSYPVVDLAIDGADEVDPFMNLVKGRGGSLLREKMVEGACKKFVVIVDESKLVPHLGGSGLAMPVEVVPYCWKFTAKRLQDLFEDCGCVAKLRTTGEQ--PFVTDNGNYVIDLYLKKDIGDLKVQATTFCGLPVFVKHRMFLDMATTV 954
            Q+++KK  A  AV+ +++GM+LGLG+GSTA   ++ +   ++ G++ ++VG+ TS +    A  LGIPL  L S   +DLAIDGADEV+P   L+KG G   ++EK+V    KKF+V+VD +KLV  L      +PVEV+P  WK   K L +L    G    LR   ++  P VTD GN ++DL  +  I   ++  +    +P  +++ +F+++   V
Sbjct:    4 QNQMKKAVAQAAVDQIQNGMILGLGSGSTAALMIEALAIKIKSGEIKDVVGVTTSFQGEVLASELGIPLKSLSSVSEIDLAIDGADEVNPKFQLIKGGGACHVQEKLVAALAKKFIVVVDSTKLVEKL-NLDFKLPVEVLPSAWKQVQKTLINL----GGEGNLRMAQKKAGPIVTDQGNLILDLTFRNGIDKPELLESQINNIPGVLENGLFVNLTDEV 218          
The following BLAST results are available for this feature:
BLAST of DY262842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 459
Match NameE-valueIdentityDescription
RPIA_STRPM3.680e-3445.31Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP83.680e-3445.31Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP33.680e-3445.31Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_STRP13.680e-3445.31Ribose-5-phosphate isomerase A OS=Streptococcus py... [more]
RPIA_SINMW3.680e-3439.81Ribose-5-phosphate isomerase A OS=Sinorhizobium me... [more]
RPIA_STRU06.278e-3445.41Ribose-5-phosphate isomerase A OS=Streptococcus ub... [more]
RPIA_RHIME6.278e-3439.81Ribose-5-phosphate isomerase A OS=Rhizobium melilo... [more]
RPIA_PROMA6.278e-3438.18Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]
RPIA_DICDI8.199e-3438.99Ribose-5-phosphate isomerase OS=Dictyostelium disc... [more]
RPIA_PROMT1.071e-3337.27Ribose-5-phosphate isomerase A OS=Prochlorococcus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AD10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262842 ID=DY262842; Name=DY262842; organism=Citrus clementina; type=EST; length=1315bp
CGCCACCCTCCCTTTTCTTTCTTCCCCTCTCTCTCTAGAGTCTCTATAAA
TAAGACCCTTTCTGGCTTTCTCATCCACACGCATTCACAACCATCCAATC
CCAATCCCTCCTCTCCCATTCAGAAGTAAAAAAAAAAAACTCTTCATTCA
ATCTTTTCATCAAACACCCCGCTGTTTCTCTTAACATTCCTCTGAATCCC
CTTCCCTGTAGAAATGGCTATCGCTATTTCTGCAGAGAAACTGTCTTCTG
TGGAGACTGGTTTGTCTCCTTTATCTTCCCCTCCGCCGGTGATTCTGACC
CAAGACGAGCTCAAGAAGATTGCTGCTTACAAGGCCGTTGAGTTTGTCGA
ATCCGGGATGGTTCTCGGCCTCGGCACCGGCTCCACCGCCAAGCACGCCG
TTGACAGAATCGGCGAGTTGTTGCGCCAAGGCAAGCTCACCAACATTGTG
GGGATACCCACCTCCAAGAAGACTCACGAACAGGCCGTTTCGCTCGGTAT
TCCTCTCTCAGATCTTGACTCGTATCCCGTCGTTGATTTGGCAATCGACG
GCGCTGACGAAGTCGATCCCTTCATGAATTTGGTCAAAGGCCGGGGTGGG
TCCTTGTTGAGGGAGAAGATGGTGGAGGGTGCCTGTAAGAAGTTTGTTGT
TATTGTCGACGAGTCCAAGCTGGTGCCTCATCTCGGAGGGAGCGGCCTGG
CCATGCCCGTTGAAGTGGTGCCGTACTGTTGGAAGTTTACGGCCAAGAGG
CTTCAGGATTTGTTTGAGGATTGTGGCTGTGTTGCCAAGCTCAGAACCAC
CGGTGAGCAGCCGTTTGTCACCGATAATGGCAACTACGTTATTGATTTGT
ATTTGAAGAAAGACATTGGCGATTTGAAAGTGCAAGCGACAACATTTTGC
GGCTTGCCGGTGTTTGTGAAGCACCGGATGTTTCTTGATATGGCTACAAC
TGTGGATTGTAGCGAGCGAGCTCGGCGTTACATTAAGAAAAAAAAATGAT
TTTTTTTTAATTTTTAATTTTAAACGGGTCAAGTCTAATTCCCAAGTGAA
TTTGGGGCACATTGGCTTGGGTAAACAAAAAAAAAAAAGGGAATTTTGGG
GGCCATTTTTTAAAGAAATGGAGAAATTCCCCGGTAATAAAGAGGGACCT
TCAAAATTTTTTTTTGAAAAAATTATAAAAAAAGAAATAAAGGGGAATTT
CTAAAAAAAAAAATAAAAGGAGAAAAAGGAAAAAAAGGGGGGAAACAAAA
AAATATAACTTTTTTTTTTTTTTTTTAAAAGAAATATATTTTCCTCTGGT
GTTTTAAAATATAAA
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