DY270394
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP3_ARATH (Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis thaliana GN=At1g43190 PE=2 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 2.024e-97 Identity = 171/219 (78.08%), Postives = 187/219 (85.39%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSKPPNKT 657 V+VL QVFSP+GFVEK+VTFQKSAGFQALIQYQ++ A AR++LQGRNIYDGCCQLDIQFSNL+ELQVNYNN+RSRD+TNPNLPAEQKGR S Y + G VA+PQM FGGGLPPGITGTNDRCTVLVSNLN+D IDEDKLFNLFSLYGNI+RIKLLRNKPDHALVQMGDGFQAELAVHFLKGA+LFGKRL+VNFSK PN T Sbjct: 114 VDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTG---------VAYPQMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNIT 323 HSP 2 Score: 36.965 bits (84), Expect = 2.024e-97 Identity = 26/67 (38.81%), Postives = 35/67 (52.24%), Query Frame = 3 Query: 687 NPTLNRFIRNALKNYRYWLLPNQEKPPFHF*PQNVTEKEFASPPERERPSIPKPHPFENKWKKKSPV 887 N LNRF RNA KNYRY P + PQ+VTE+E + + E ++ FE KK++ V Sbjct: 333 NSNLNRFNRNAAKNYRYCCSPT-KMIHLSTLPQDVTEEEVMNHVQ-EHGAVVNTKVFEMNGKKQALV 397
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP1_HUMAN (Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1 PE=1 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.201e-38 Identity = 91/218 (41.74%), Postives = 125/218 (57.34%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSKPPN 651 ++VL Q+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ + A G+ P P G + PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK +++ SK N Sbjct: 197 LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 413
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP1_BOVIN (Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 6.405e-38 Identity = 90/215 (41.86%), Postives = 124/215 (57.67%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPSQSGYSEAGGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 ++VL Q+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ + A G+ P P G + PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALVQM DG QA+LA+ L G L GK +++ SK Sbjct: 197 LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVRITLSK 410
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP2_RAT (Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus GN=Ptbp2 PE=2 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 5.995e-36 Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP------SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 ++VL Q+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P + + E + PGA + +A P G+P G N +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK ++V SK Sbjct: 194 LDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2) HSP 1 Score: 152.14 bits (383), Expect = 5.995e-36 Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP------SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 ++VL Q+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P + + E + PGA + +A P G+P G N +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK ++V SK Sbjct: 194 LDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 5.995e-36 Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRP------SQSGYSEAGGMYAPGARA-VAFPQMXXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 ++VL Q+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G+P + + E + PGA + +A P G+P G N +LVSNLN + + LF LF +YG++ R+K+L NK D AL+QM DG Q++LA++ L G ++GK ++V SK Sbjct: 194 LDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGD-GQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGN--TVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSK 411
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: ROD1_MOUSE (Regulator of differentiation 1 OS=Mus musculus GN=Rod1 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.975e-35 Identity = 96/238 (40.34%), Postives = 132/238 (55.46%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAP------GARAVAFPQ------------MXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 +EVL Q+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS + + G M +P A A+AFPQ + G + PG +G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L+ SK Sbjct: 166 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAIPGASGMPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQLAMNHLSGQRLYGKVLRATLSK 402
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: PTBP1_RAT (Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus GN=Ptbp1 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.975e-35 Identity = 93/240 (38.75%), Postives = 128/240 (53.33%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQK---------------GRPSQSGYSEA----------GGMYAPGARAVAFPQMXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 ++VL Q+FS G V KI+TF K+ FQAL+QY SA A+ SL G+NIY+ CC L I FS L L V YNN++SRD+T P+LP+ G S S Y+ A G+ P P G + PG+ G + +LVSNLN +R+ LF LF +YG++ R+K+L NK ++ALV+M DG QA+LA+ L G L GK +++ SK Sbjct: 196 LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPGIMSASPYAGAVPSHLCHPSRAGLSVPNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGN-SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVEMADGSQAQLAMSHLNGHKLHGKSVRITLSK 434
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: ROD1_RAT (Regulator of differentiation 1 OS=Rattus norvegicus GN=Rod1 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 5.075e-35 Identity = 95/238 (39.92%), Postives = 132/238 (55.46%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS-----QSGYSEAGGMYAP------GARAVAFPQ------------MXXXXXXXXXFGGGLP-PGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 +EVL Q+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS + + G M +P A A+AFPQ + G + PG +G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA++A++ L G L+GK L+ SK Sbjct: 166 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIMSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGPLTLTSSAVSGRMAIPGASGIPGNSVLLVTNLNPDFITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADASQAQIAMNHLSGQRLYGKVLRATLSK 402
BLAST of DY270394 vs. ExPASy Swiss-Prot
Match: ROD1_HUMAN (Regulator of differentiation 1 OS=Homo sapiens GN=ROD1 PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 1.477e-34 Identity = 97/242 (40.08%), Postives = 130/242 (53.72%), Query Frame = 1 Query: 1 VEVLLQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSAVVARSSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPNLPAEQKGRPS---------------QSGYSEAGGMYAPGARAVAFPQM-------------XXXXXXXXXFGGGLPPGITGTNDRCTVLVSNLNSDRIDEDKLFNLFSLYGNIIRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKRLKVNFSK 642 +EVL Q+FS G V KI+TF K+ FQAL+QY +A A+ +L G+NIY+ CC L I FS L L V YNN++SRDFT +LP G+PS S Y+ A G +AP A+ FPQ G PG +G +LV+NLN D I LF LF +YG++ R+K++ NK ++ALVQM D QA+LA++ L G L+GK L+ SK Sbjct: 195 LEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGD-GQPSLEPPMAAAFGAPGIISSPYAGAAG-FAP---AIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPGASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSK 431 The following BLAST results are available for this feature:
BLAST of DY270394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >DY270394 ID=DY270394; Name=DY270394; organism=Citrus clementina; type=EST; length=1208bpback to top |