DY271226

Overview
NameDY271226
Unique NameDY271226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1047
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14740 contig Ccv1_Contig14740:29..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY271226 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 2.046e-50
Identity = 113/174 (64.94%), Postives = 134/174 (77.01%), Query Frame = 3
Query:  153 VADDKTVIPS---PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSWF 656
            VAD+K ++     PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENKA KK+S+I +WENS+KA +                 Y EKMKNK+AL+HKEAEEKRAMIEAKRGEDLLKAEELAAKYRATG+APKK+L  F
Sbjct:   29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198          
BLAST of DY271226 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.962e-41
Identity = 93/169 (55.03%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  150 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSWF 656
            DVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EKR+S +RAWEESEKS+AENKA KK++ + +WENS+KAAV                 Y E+MKNK+A IHKEAEE+RAMIEAKRGED+LKAEE AAKYRATG  PK     F
Sbjct:   48 DVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212          
BLAST of DY271226 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.507e-40
Identity = 93/169 (55.03%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  150 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIVSWENSRKAAVXXXXXXXXXXXXXXXXXYVEKMKNKMALIHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGSAPKKLLSWF 656
            +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S + +WENS+KAAV                 Y EKMKNK+A IHK AEEKRAM+EAK+GE+LLKAEE+ AKYRATG  PK     F
Sbjct:   30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190          
The following BLAST results are available for this feature:
BLAST of DY271226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU2.046e-5064.94Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH2.962e-4155.03Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH2.507e-4055.03Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAP9YE12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY271226 ID=DY271226; Name=DY271226; organism=Citrus clementina; type=EST; length=1047bp
CTTCAGCTTTGCTTTAAGCTTAAGGTTTCGGAGCAGAGAGAGACATGGCA
GAGGAGGAACCAAAGAAGCTTGAAACTGAAACCCCGACCGAGCCGCCGCC
TCCTCCTTCTACAGAACCAGCCGCTCCGGCAGCAGCTGAGCCTCCTAAAG
ATGTTGCCGATGACAAGACCGTAATTCCATCTCCACCTGCTGAGGATAAG
CCTGAGGAATCCAAAGCCCTTGCTGTTGTTGATAAGGCTCCTGAGGCTGA
ACCTCCTGCTGGTGAAAAAAGTACAGAGGGCTCTGTAAACAGAGATGCGG
TGCTTGCAAGAGTTGAAACGGAGAAGAGGATTTCGCTGATTAGAGCATGG
GAAGAAAGTGAGAAGTCGCAAGCAGAGAACAAAGCTCATAAAAAGCTATC
TTCCATTGTTTCATGGGAGAACAGCCGGAAAGCAGCTGTGGAAGCTGAGC
TAAAAAAGATTGAGGAACAATTGGAGAAGAAGAAGGCTGAGTATGTAGAG
AAAATGAAAAACAAGATGGCACTAATCCACAAGGAAGCAGAAGAAAAGAG
GGCAATGATTGAAGCTAAGAGAGGGGAAGACCTTCTCAAGGCAGAGGAGC
TGGCTGCCAAGTATCGAGCGACGGGCTCTGCCCCCAAGAAGCTCCTTAGT
TGGTTTGGAAGTTAAAATTCTCAAGCTTGGTTGATAAATTTTATTCTATG
TATATTTCCTTTGAGCATTCTTTTGTTTATTTAGTGTTTGTGTTTGAATT
CTTTATGAGAATTGGAAAAATGGTTCCTTATTGTGCGTGGCTAATGGATG
TATTTGGTGCGTATTTACAATTTGGTTTGCAAACGTTTGAAATATGGTTG
ACCCCTCCCACATACACCCCACCATCCACCAAGACAACGCAAGAACTTCC
CCCCCGTTTTTTGGTGAATAGTGTGGATATAAAAAAAAGCGCTCTGGTTA
ATAATTTTTTGGGCACTGAAAAGGGTACACTTCTGCAAAATCAAAATACT
ATTATTTTCCGCCTCACGACAAAAGTCCCCTGAGAGGATGAGGGAAT
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